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Supported Applications

PEET

  • Description

    (Particle Estimation for Electron Tomography) a package for aligning and averaging particles in 3-D subvolumes extracted from tomograms. If PEET and IMOD are both installed, most PEET operations are available from the eTomo graphical user interface in IMOD. PEET is written in Matlab and a compiled version is distributed along with the Matlab runtime environment needed to run it.

  • Usage

    To list all executables provided by PEET, run: $ sbgrid-list peet Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install peet Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    D. Nicastro, C. Schwartz, J. Pierson, R. Gaudette, M. E. Porter, and J. R. McIntosh. 2006. The Molecular Architecture of Axonemes Revealed by Cryoelectron Tomography. Science. 313(5789): 944-948.

    J. M. Heumann, A. Hoenger, and D. N. Mastronarde. 2011. Clustering and variance maps for cryo-electron tomography using wedge-masked differences. Journal of Structural Biology. 175(3): 288-299.


    • *Full citation information available through

  • Keywords

    Tomography

  • Default Versions

    Linux 64:  1.17.0 (8.2 GB)
    OS X INTEL:  1.17.0 (4.5 GB)

  • Other Versions

      Linux 64:

      1.15.0 (6.3 GB) , 1.15.1 (6.3 GB) , 1.16.0 (14.2 GB) , 1.18.0a (9.1 GB)

    • OS X INTEL:

      1.15.0 (5.7 GB) , 1.15.1 (5.7 GB) , 1.16.0 (5.7 GB) , 1.18.0a (4.8 GB) , 1.18.0a_arm (4.0 GB)

  • Developers

    David N Mastronarde, John Monroe Heumann

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