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SBGridTV

Supported Applications

OpenFold

  • Description

    a trainable, memory-efficient, and GPU-friendly PyTorch reproduction of DeepMind's AlphaFold 2.

  • Usage Notes

    SBGrid/BioGrids OpenFold provides the following directly callable programs:

    build_deepspeed_config.py data_dir_to_fasta.py generate_chain_data_cache.py generate_mmcif_cache.py precompute_alignments.py precompute_alignments_mmseqs.py prep_proteinnet_msas.py python.openfold run_pretrained_openfold.py train_openfold.py unpack_proteinnet.py

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install openfold Copy to clipboard
  • Primary Citation*

    G. Ahdritz, N. Bouatta, S. Kadyan, Q. Xia, W. Gerecke, and M. AlQuraishi. 2021. OpenFold. Zenodo. https://doi.org/10.5281/zenodo.5709539.


    • *Full citation information available through

  • Citation Note

    Any work that cites OpenFold should also cite AlphaFold.

  • Keywords

    Tertiary Structure Prediction

  • Default Versions

    Linux 64:  0.1.0

  • Developers

    Mohammed AlQuraishi, Gustaf Ahdritz, Qinghui Xia, Sachin Kadyan

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