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Supported Applications

OpenFold

  • Description

    A faithful PyTorch reproduction of DeepMind's AlphaFold 2.

  • Usage Notes

    SBGrid/BioGrids OpenFold provides the following directly callable programs:

    build_deepspeed_config.py data_dir_to_fasta.py generate_chain_data_cache.py generate_mmcif_cache.py precompute_alignments.py precompute_alignments_mmseqs.py prep_proteinnet_msas.py python.openfold run_pretrained_openfold.py train_openfold.py unpack_proteinnet.py

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install openfold Copy to clipboard
  • Citation Note

    Please cite OpenFold as follows:


    @software{Ahdritz_OpenFold_2021,

     author = {Ahdritz, Gustaf and Bouatta, Nazim and Kadyan, Sachin and Xia, Qinghui and Gerecke, William and AlQuraishi, Mohammed},

     doi = {10.5281/zenodo.5709539},

     month = {11},

     title = {{OpenFold}},

     url = {https://github.com/aqlaboratory/openfold},

     year = {2021}

    }

    Any work that cites OpenFold should also cite AlphaFold.

  • Default Versions

    Linux 64:  0.1.0

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