Supported Applications

MAFFT

Description

a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <200 sequences), FFT-NS-2 (fast; for alignment of <30,000 sequences).
Usage
To list all executables provided by MAFFT, run: $ sbgrid-list mafft
Installation
Use the following command to install this title with the CLI client: $ sbgrid-cli install mafft Available operating systems: Linux 64, OS X INTEL
Primary Citation*

K. Katoh, K. Misawa, K. Kuma, and T. Miyata. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30(14): 3059-3066.
(Note: describes the FFT-NS-1, FFT-NS-2 and FFT-NS-i strategies)
- *Full citation information available through
Citation Note

A full list of citations can also be found on the MAFFT website.
Webinars

Topic: MAFFT/MAFFTash: Web services for structure-informed multiple sequence alignment
Presenters: Kazutaka Katoh and Daron Standley, Immunology Frontier Research Center, Osaka University

Host: Andrew Morin
Recorded on July 17, 2014

Keywords

Multiple Structure Alignment, Protein Structure Analysis, Proteomics
Default Versions

Linux 64: 7.525 (61.2 MB)
OS X INTEL: 7.525 (64.0 MB)
Other Versions
- OS X INTEL:
  7.453 (13.8 MB) , 7.471 (13.1 MB) , 7.475 (16.0 MB)
Developers

Katoh Kazutaka