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Supported Applications

MadBend

  • Description

    a program for calculating the curvature of nucleic acids. From a given list of base pair step roll, tilt and twist values, and the specification of a reference plane, the program produces the global tilt, global roll and the bend magnitude. These quantities describe the direction and magnitude of a bend angle for analysis of DNA and DNA/protein complex geometries.

  • Usage

    To list all executables provided by MadBend, run: $ sbgrid-list madbend Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install madbend Copy to clipboard Available operating systems: Linux 64

  • Primary Citation*

    D. Strahs and T. Schlick. 2000. A-tract bending: Insights into experimental structues by molecular dynamics simulations. J Mol Biol. 301: 643-663.


    • *Full citation information available through

  • Keywords

    Analysis, Nucleic Acids

  • Default Versions

    Linux 64:  1.0 (1.5 MB)

  • Developers

    Dan Strahs, Tamar Schlick

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