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LipIDens

  • Description

    a pipeline for simulation assisted interpretation of lipid or lipid-like densities in e.g. cryogenic electron microscopy (cryo-EM) structures of membrane proteins.

  • Usage

    To list all executables provided by LipIDens, run: $ sbgrid-list lipidens Copy to clipboard
  • Usage Notes

    LipIDens provides three callable programs:

    python.lipidens

    lipidens_master_run.py

    master_run.py

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install lipidens Copy to clipboard Available operating systems: Linux 64
  • Primary Citation*

    T. B. Ansell, W. Song, C. E. Coupland, L. Carrique, R. A. Corey, A. L. Duncan, C. K. Cassidy, M. M. G. Geurts, T. Rasmussen, A. B. Ward, C. Siebold, and P. J. S. &. M. S. P. Sansom. 2023. LipIDens: simulation assisted interpretation of lipid densities in cryo-EM structures of membrane proteins. Nature Communications.


    • *Full citation information available through

  • Keywords

    Electron Microscopy

  • Default Versions

    Linux 64:  1.0 (1.6 GB)

  • Developers

    T. Bertie Ansell, Mark S.P. Sansom

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