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Supported Applications

LightDock

  • Description

    a protein-protein, protein-peptide and protein-DNA docking framework based on the Glowworm Swarm Optimization (GSO) algorithm.

  • Usage

    To list all executables provided by LightDock, run: $ sbgrid-list lightdock Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install lightdock Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    J. Roel-Touris, B. Jiménez-García, and A. M. J. J. Bonvin. 2020. Integrative modeling of membrane-associated protein assemblies. Nature Communications. 11: 6210.

    J. Roel-Touris, A. M. J. J. Bonvin, and B. Jiménez-García. 2020. LightDock goes information-driven. Bioinformatics. 36(3): 950-952.

    B. Jiménez-García, J. Roel-Touris, M. Romero-Durana, M. Vidal, D. Jiménez-González, and J. Fernández-Recio. 2018. LightDock: a new multi-scale approach to protein–protein docking. Bioinformatics. 34(1): 49-55.


    • *Full citation information available through

  • Webinars

    LightDock

    Topic: LightDock: Shedding light into the dark fraction of the protein interactome

    Presenters:
    Brian Jimenez-Garcia, Ph.D., University Utrecht, and
    Jorge Roel, Ph.D., Department of Structural Biology, Protein Design and Modeling group, IBMB-CSIC, Barcelona

    Host: Pete Meyer

    Recorded on May 18, 2021

  • Keywords

    Protein-Ligand Docking, Protein-Protein Docking

  • Default Versions

    Linux 64:  0.9.4 (636.4 MB)
    OS X INTEL:  0.9.4 (599.1 MB)

  • Other Versions

      Linux 64:

      0.8.1 (625.7 MB) , 0.9.0 (801.5 MB)

    • OS X INTEL:

      0.8.1 (596.5 MB) , 0.9.0 (780.1 MB)

  • Developers

    Brian Jiménez-García, Alexandre MJJ Bonvin

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