Supported Applications

LightDock

Description

a protein-protein, protein-peptide and protein-DNA docking framework based on the Glowworm Swarm Optimization (GSO) algorithm.
Installation
Use the following command to install this title with the CLI client: $ sbgrid-cli install lightdock
Primary Citation*

J. Roel-Touris, B. Jiménez-García, and A. M. J. J. Bonvin. 2020. Integrative modeling of membrane-associated protein assemblies. Nature Communications. 11: 6210.

J. Roel-Touris, A. M. J. J. Bonvin, and B. Jiménez-García. 2020. LightDock goes information-driven. Bioinformatics. 36(3): 950-952.

B. Jiménez-García, J. Roel-Touris, M. Romero-Durana, M. Vidal, D. Jiménez-González, and J. Fernández-Recio. 2018. LightDock: a new multi-scale approach to protein–protein docking. Bioinformatics. 34(1): 49-55.
- *Full citation information available through
Citation Note

Please cite all three primary citations above.
Webinars

Topic: LightDock: Shedding light into the dark fraction of the protein interactome

Presenters:
Brian Jimenez-Garcia, Ph.D., University Utrecht, and
Jorge Roel, Ph.D., Department of Structural Biology, Protein Design and Modeling group, IBMB-CSIC, Barcelona

Host: Pete Meyer

Recorded on May 18, 2021