Supported Applications
Infernal
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Description
(INFERence of RNA ALignment) searches DNA sequence databases for RNA structure and sequence similarities and uses a special case of profile stochastic context-free grammars called covariance models (CMs). In many cases It is more capable of identifying RNA homologs that conserve their secondary structure more than their primary sequence.
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Installation
Use the following command to install this title with the CLI client:$ sbgrid-cli install infernal
Available operating systems: Linux 64, OS X INTEL -
Primary Citation*
E. P. Nawrocki and S. R. Eddy. 2013. Infernal 1.1: 100-fold faster RNA homology searches. Bioinformatics. 29(22): 2933-2935.
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*Full citation information available through
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Keywords
Comparative Genomics, Genomics, Multiple Nucleotide Sequence Alignment
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Default Versions
Linux 64:  1.1.2 (157.6 MB)
OS X INTEL:  1.1.2 (87.6 MB) -
Developers
Sean R Eddy, Nawrocki P Eric