Supported Applications

Infernal

Description

(INFERence of RNA ALignment) a program that searches DNA sequence databases for RNA structure and sequence similarities and uses a special case of profile stochastic context-free grammars called covariance models (CMs). In many cases It is more capable of identifying RNA homologs that conserve their secondary structure more than their primary sequence.
Usage
To list all executables provided by Infernal, run: $ sbgrid-list infernal
Installation
Use the following command to install this title with the CLI client: $ sbgrid-cli install infernal Available operating systems: Linux 64, OS X INTEL
Primary Citation*

E. P. Nawrocki and S. R. Eddy. 2013. Infernal 1.1: 100-fold faster RNA homology searches. Bioinformatics. 29(22): 2933-2935.
- *Full citation information available through

Keywords

Comparative Genomics, Genomics, Multiple Nucleotide Sequence Alignment
Default Versions

Linux 64: 1.1.5 (105.5 MB)
OS X INTEL: 1.1.5 (101.1 MB)
Other Versions
- OS X INTEL:
  1.1.2 (87.6 MB) , 1.1.4 (248.2 MB) , 1.1.5_arm (98.2 MB)
Developers

Sean R Eddy, Nawrocki P Eric