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Supported Applications

iMOD (NMA)

  • Description

    a toolkit to perform Normal Mode Analysis (NMA) in internal coordinates (IC) on both protein and nucleic acid atomic structures. Vibrational analysis, motion animations, morphing trajectories and Monte-Carlo simulations can be easily carried out at different scales of resolution using this toolkit.

  • Usage

    To list all executables provided by iMOD (NMA), run: $ sbgrid-list imod-nma Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install imod-nma Copy to clipboard Available operating systems: Linux 64

  • Primary Citation*

    J. R. Lopéz-Blanco, J. I. Garzón, and P. Chacón. 2011. iMod: multipurpose normal mode analysis in internal coordinates. Bioinformatics. 27(20): 2843-2850.


    • *Full citation information available through

  • Keywords

    Computational Chemistry

  • Default Versions

    Linux 64:  1.04 (84.3 MB)

  • Other Versions

      Linux 64:

      1.03 (69.3 MB)

  • Developers

    Jose Ramon Lopez-Blanco, Pablo Chacón

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