Supported Applications

ESMFold

Description

a program that harnesses the ESM-2 language model to generate accurate structure predictions end to end directly from the sequence of a protein.
Usage
To list all executables provided by ESMFold, run: $ sbgrid-list esmfold
Installation
Use the following command to install this title with the CLI client: $ sbgrid-cli install esmfold Available operating systems: Linux 64
Primary Citation*

Z. Lin, H. Akin, R. Rao, B. Hie, Z. Zhu, W. Lu, N. Smetanin, R. Verkuil, O. Kabeli, Y. Shmueli, A. d. S. Costa, M. Fazel-Zarandi, T. Sercu, S. Candido, and A. Rives. 2022. Evolutionary-scale prediction of atomic level protein structure with a language model. bioRxiv 2022.07.20.500902.
- *Full citation information available through

Keywords

Machine Learning, Protein-Protein Interaction Prediction, Protein Structure Analysis
Default Versions

Linux 64: 1.0.3 (5.4 GB)
Developers

Tom Sercu, Alexander Rives, Roshan Rao, Nikita Smetanin, Zeming Lin