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Supported Applications

ENTANGLE

  • Description

    a JAVA program that reads PDB files containing a nucleic-acid protein complex and gives a listing of interactions that occur at the interface between the nucleic-acid/protein complex and classifies these interactions into hydrogen bonds, electrostatic, hydrophobic, and Van der Waals. Entangle also recognizes when a stacking interaction occurs between two aromatic residues.

  • Usage

    To list all executables provided by ENTANGLE, run: $ sbgrid-list entangle Copy to clipboard

  • Usage Notes

    Not all PDBs work with this program.

    Some example PDBs that work:
    1URW
    1CVJ

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install entangle Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    J. Allers and Y. Shamoo. 2001. Structure-based analysis of protein-RNA interactions using the program ENTANGLE. J Mol Biol. 311(1): 75-86.


    • *Full citation information available through

  • Keywords

    Analysis, Nucleic Acids

  • Default Versions

    Linux 64:  1.0 (9.3 MB)
    OS X INTEL:  1.0 (9.3 MB)

  • Developers

    Yousif Shamoo

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