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SBGridTV

Supported Applications

ENTANGLE

  • Description

    a JAVA program that reads PDB files containing a nucleic-acid protein complex and gives a listing of interactions that occur at the interface between the nucleic-acid/protein complex. These interactions are then classified into hydrogen bonds, electrostatic, hydrophobic, and Van der Waals. Entangle also recognizes when a stacking interaction occurs between two aromatic residues. In addition to a listing, Entangle allows the user to probe the interface in three-dimensions.

  • Usage Notes

    Not all PDBs work with this program.

    Some example PDBs that work:
    1URW
    1CVJ

  • Primary Citation*

    J. Allers and Y. Shamoo. 2001. Structure-based analysis of protein-RNA interactions using the program ENTANGLE. J Mol Biol. 311(1): 75-86.


    • *Full citation information available through

  • Categories

    Structure Visualization & Analysis

  • Default Versions

    Linux 64:  1.0
    OS X INTEL:  1.0

  • Other Available Versions

      Linux 32:

      1.0
    • powermac:

      1.0
  • Developers

    Yousif Shamoo.

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