Supported Applications

EBSeq

Description

a Bioconductor software package installed in R 3.2.2 for gene and isoform differential expression analysis of RNA-seq data.
Usage
To list all executables provided by EBSeq, run: $ sbgrid-list ebseq
Usage Notes

More information can also be found at: https://www.biostat.wisc.edu/~kendzior/EBSEQ/

Graphical User Interface Manual also available at: https://www.biostat.wisc.edu/~ningleng/EBSeq_Package/EBSeq_Interface/EBSeq.Interface.Manual.pdf
Installation
Use the following command to install this title with the CLI client: $ sbgrid-cli install ebseq Available operating systems: Linux 64, OS X INTEL
Primary Citation*

Leng, N., J. Dawson, J. Thomson, V. Ruotti, A. Rissman, B. Smits, J. Haag, M. Gould, R. Stewart, and C. Kendziorski. 2013. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics. Oxford Journals. 29(8): 1035-1043.
- *Full citation information available through

Keywords

Bioconductor Packages, High-throughput sequencing, Normalization/Differential Expression, RNA-Sequencing
Default Versions

Linux 64: 1.10.0 (1.3 KB)
OS X INTEL: 1.10.0 (1.2 KB)
Developers

Christina Kendziorski, Ning Leng