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Supported Applications

DireX

  • Description

    a tool that performs efficient geometry-based conformational sampling of protein structures under experimental restraints. It combines prior structural information with experimental data through the Deformable Elastic Network (DEN) approach which drastically reduces over-fitting.

  • Usage

    To list all executables provided by DireX, run: $ sbgrid-list direx Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install direx Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    G.F.Schroeder, A.T.Brunger, and M.Levitt. 2007. Combining Efficient Conformational Sampling with a Deformable Elastic Network Model Facilitates Structure Refinement at Low Resolution. Structure. 15(12): 1630-1641.


    • *Full citation information available through

  • Webinars

    DireX

    Topic: DireX - Cross-validated Real-space Refinement to Density Map
    Presenter: Gunnar Schröder, PhD, Assistant Professor, University of Düsseldorf, Jülich, Germany

    Host: Pete Meyer
    Recorded on May 10, 2016

  • Keywords

    Analysis

  • Default Versions

    Linux 64:  0.7.1-rev409 (36.5 MB)
    OS X INTEL:  0.7.1-rev409 (9.6 MB)

  • Other Versions

      Linux 64:

      0.6.2 (6.1 MB) , 0.7.0 (8.7 MB)

    • OS X INTEL:

      0.6.2 (2.3 MB) , 0.7.0 (13.5 MB)

  • Developers

    Gunnar Schroeder

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