Supported Applications
Bowtie 2
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Description
an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.
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Usage
To list all executables provided by Bowtie 2, run:$ sbgrid-list bowtie2 -
Installation
Use the following command to install this title with the CLI client:$ sbgrid-cli install bowtie-2Available operating systems: Linux 64, OS X INTEL -
Primary Citation*
B. Langmead and S. L. Salzberg. 2012. Fast gapped-read alignment with Bowtie 2. Nature Methods. Nature Publishing Group, a division of Macmillan Publishers Limited. 9(4): 357-359.
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*Full citation information available through
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Keywords
ChIP-Sequencing, DNA-Sequencing, High-throughput sequencing, Read Alignment, RNA-Sequencing, WGS Analysis
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Default Versions
Linux 64: 2.5.4 (52.7 MB)
OS X INTEL: 2.5.4 (7.7 MB) -
Other Versions
Linux 64:
2.5.2 (52.4 MB) , 2.5.3 (52.4 MB) -
OS X INTEL:
2.5.2 (7.2 MB) , 2.5.3 (7.3 MB)
Developers
Ben Langmead, Steven Salzberg