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AUTO3DEM

  • Description

    an automated image reconstruction system that coordinates the execution of the parallel, numerically-intensive codes P3DR, PCUT, POR, PPFT, PSF and RobEM (a GUI driven program used both for image preprocessing and visualization).

  • Usage

    To list all executables provided by AUTO3DEM, run: $ sbgrid-list auto3dem Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install auto3dem Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    X. Yan, R. S. Sinkovits, and T. S. Baker. 2007. AUTO3DEM: an automated and high throughput program for image reconstruction of icosahedral particles. J Struct Biol. 157(1): 73-82.


    • *Full citation information available through

  • Keywords

    Electron Microscopy

  • Default Versions

    Linux 64:  4.05 (13.8 MB)
    OS X INTEL:  4.05 (15.4 MB)

  • Other Versions

      Linux 64:

      4.02 (14.1 MB) , 4.03 (13.9 MB)

    • OS X INTEL:

      4.02 (20.4 MB) , 4.03 (20.7 MB)

  • Developers

    Timothy Baker, Xiaodong Yan

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