Supported Applications
AlphaPulldown
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Description
a Python package that streamlines protein-protein interaction screens and high-throughput modelling of higher-order oligomers using AlphaFold-Multimer.
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Usage
To list all executables provided by AlphaPulldown, run:$ sbgrid-list alphapulldown -
Installation
Use the following command to install this title with the CLI client:$ sbgrid-cli install alphapulldownAvailable operating systems: Linux 64 -
Primary Citation*
D. Yu, G. Chojnowski, M. Rosenthal, and J. Kosinski. 2022. AlphaPulldown – a Python package for protein-protein interaction screens using AlphaFold-Multimer. bioRxiv. 2022.08.05.502961.
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*Full citation information available through
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Keywords
Protein-Protein Interaction Prediction, Protein Structure Analysis
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Default Versions
Linux 64: 2.0.4 (18.6 GB)
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Other Versions
Linux 64:
0.21.5 (4.3 GB) , 0.30.5 (7.3 GB) , 0.30.7 (7.6 GB) , 1.0.4 (6.5 GB) , 2.0.0b2 (7.9 GB) , 2.0.1 (10.1 GB) , 2.0.3 (6.8 GB)
Developers
Jan Kosinski, Dingquan Yu