Supported Applications
AlphaPickle
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Description
a multipurpose Python script for producing plots and user-legible files from the output of AlphaFold2 (notebook) and Colabfold (notebook).
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Usage
To list all executables provided by AlphaPickle, run:$ sbgrid-list alphapickle -
Usage Notes
The command
alphapickleshould be used in place of thepython3 run_AlphaPickle.pyspecified in the AlphaPickle Readme. -
Installation
Use the following command to install this title with the CLI client:$ sbgrid-cli install alphapickleAvailable operating systems: Linux 64, OS X INTEL -
Primary Citation*
M. J. Arnold. 2021. AlphaPickle. doi.org/10.5281/zenodo.5708709.
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*Full citation information available through
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Citation Note
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Keywords
Protein-Protein Interaction Prediction, Protein Structure Analysis
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Default Versions
Linux 64: 1.5.4 (2.5 GB)
OS X INTEL: 1.5.4 (1.3 GB) -
Other Versions
Linux 64:
1.4.1 (2.2 GB) , 1.5.3 (2.6 GB) -
OS X INTEL:
1.4.1 (3.4 GB) , 1.5.3 (1.5 GB)
Developers
Matt Arnold