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SBGridTV

Supported Applications

ACEMD

  • Description

    a heavily optimized molecular dynamics (MD) engine specially designed to run on NVIDA GPUs. It is extremely fast (115ns/day for DHFR using 1 GPU) and performs MD simulations on the microsecond scale in a single workstation. ACEMD can read CHARMM/NAMD and AMBER input files, works with CUDA and OpenCL, and uses similar syntax to other MD software.

  • Usage Notes

    ‚ÄčACEMD (Basic Mode) is freely available to non-profit labs. Basic mode limits users from running the software on more than one GPU. To access this software, users must register using the htmd_register command. Users will need an ACEMD Pro node-locked license from Acellera to run the software on multiple GPUs.

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid install acemd Copy to clipboard
  • Primary Citation*

    M. J. Harvey, G. Giupponi, and G. DeFabritiis. 2009. ACEMD: Accelerating biomolecular dynamics in the microsecond time scale. Journal of Chemical Theory and Computation. 5(6): 1632-1639.


    • *Full citation information available through

  • Keywords

    Computational Chemistry

  • Default Versions

    Linux 64:  3.3.0

  • Other Versions

      Linux 64:

      2306, 2017.11.30, 20170619
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