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HADDOCK

  • Description

    (High Ambiguity Driven biomolecular DOCKing) relies on an approach that makes use of biochemical and/or biophysical interaction data, such as chemical shift perturbation data resulting from NMR titration experiments, mutagenesis data or bioinformatic predictions.

  • Usage

    To list all executables provided by HADDOCK, run: $ sbgrid-list haddock Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install haddock Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    R. V. Honorato, M. E. Trellet, B. Jiménez-García, J. J. Schaarschmidt, M. Giulini, V. Reys, P. I. Koukos, J. P. G. L. M. Rodrigues, E. Karaca, G. C. P. van Zundert, J. Roel-Touris, C. W. van Noort, Z. Jandová, and A. S. J. M. &. A. M. J. J. Bonvin. 2024. The HADDOCK2.4 web server for integrative modeling of biomolecular complexes. Nature Protocols. 3219-3241.


    • *Full citation information available through

  • Webinars

    Haddock

    Topic: Haddock

    Presenter: Prof. Alexandre Bonvin, University Utrecht


    Host: Jason Key
    Recorded on: June 29, 2021

    HADDOCK

    Topic: Modelling biomolecular complexes using HADDOCK: local vs server mode.
    Presenter: Alexandre Bonvin, Computational Structural Biology group, Bijvoet Center for Biomolecular Research, University of Utrecht, The Netherlands

    Host: Jason Key
    Recorded on September 8, 2015

  • Keywords

    Analysis, Computational Chemistry, NMR

  • Default Versions

    Linux 64:  2.5 (321.5 MB)
    OS X INTEL:  2.5 (295.5 MB)

  • Other Versions

      Linux 64:

      2.1 (18.2 MB) , 2.2 (48.4 MB) , 2.4 (634.9 MB)

    • OS X INTEL:

      2.0 (16.6 MB) , 2.1 (18.2 MB) , 2.4 (1.1 GB)

  • Developers

    Alexandre MJJ Bonvin

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