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Supported Applications

Deep Finder

  • Description

    is an original deep learning approach to localize macromolecules in cryo electron tomography images. The method is based on image segmentation using a 3D convolutional neural network.

  • Usage

    To list all executables provided by Deep Finder, run: $ sbgrid-list deepfinder Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install deepfinder Copy to clipboard Available operating systems: Linux 64

  • Primary Citation*

    E. Moebel, A. Martinez-Sanchez, L. Lamm, R. D. Righetto, W. Wietrzynski, S. Albert, D. Larivière, E. Fourmentin, S. Pfeffer, J. Ortiz, W. Baumeister, T. Peng, B. D. Engel, and C. Kervrann. 2021. Deep learning improves macromolecule identification in 3D cellular cryo-electron tomograms. Nature methods. 18(11): 1386-1394.


    • *Full citation information available through

  • Keywords

    Visualization

  • Default Versions

    Linux 64:  20230510 (4.6 GB)

  • Developers

    Lorenz Lamm, Ricardo Righetto, Benjamin D Engel, Charles Kervrann

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