Member Publications

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82 Member Publications for April 2014

Optogenetic control of chemokine receptor signal and T-cell migration.
1. Proc Natl Acad Sci U S A - published April 29, 2014
2. Xu Y., Hyun YM., Lim K., Lee H., Cummings RJ., Gerber SA., Bae S., Cho TY., Lord EM., Kim M.
Oral Human Papillomavirus (HPV) Infection in HPV-Positive Patients With Oropharyngeal Cancer and Their Partners.
1. J Clin Oncol - published April 28, 2014
2. D'Souza G., Gross ND., Pai SI., Haddad R., Anderson KS., Rajan S., Gerber J., Gillison ML., Posner MR.
Coxsackievirus cloverleaf RNA containing a 5' triphosphate triggers an antiviral response via RIG-I activation.
1. PLoS One - published April 25, 2014
2. Feng Q, Langereis MA, Olagnier D, Chiang C, van de Winkel R, van Essen P, Zoll J, Hiscott J, van Kuppeveld FJ
Discovery of the first N-hydroxycinnamamide-based histone deacetylase 1/3 dual inhibitors with potent oral antitumor activity.
1. J Med Chem - published April 24, 2014
2. Li X., Inks ES., Li X., Hou J., Chou CJ., Zhang J., Jiang Y., Zhang Y., Xu W.
Probing transient conformational states of proteins by solid-state R(1ρ) relaxation-dispersion NMR spectroscopy.
1. Angew Chem Int Ed Engl - published April 22, 2014
2. Ma P., Haller JD., Zajakala J., Macek P., Sivertsen AC., Willbold D., Boisbouvier J., Schanda P.
Development of lycopene micelle and lycopene chylomicron and a comparison of bioavailability.
1. Nanotechnology - published April 18, 2014
2. Chen YJ., Inbaraj BS., Pu YS., Chen BH.
The intracellular B30.2 domain of butyrophilin 3A1 binds phosphoantigens to mediate activation of human Vγ9Vδ2 T cells.
1. Immunity - published April 17, 2014
2. Sandstrom A., Peigné CM., Léger A., Crooks JE., Konczak F., Gesnel MC., Breathnach R., Bonneville M., Scotet E., Adams EJ.
Naphthalene degradation in seawater by UV irradiation: the effects of fluence rate, salinity, temperature and initial concentration.
1. Mar Pollut Bull - published April 15, 2014
2. Jing L., Chen B., Zhang B., Zheng J., Liu B.
Molecular mechanism for differential recognition of membrane phosphatidylserine by the immune regulatory receptor Tim4.
1. Proc Natl Acad Sci U S A - published April 15, 2014
2. Tietjen GT., Gong Z., Chen CH., Vargas E., Crooks JE., Cao KD., Heffern CT., Henderson JM., Meron M., Lin B., Roux B., Schlossman ML., Steck TL., Lee KY., Adams EJ.
High-resolution mapping of anthropogenic heat in China from 1992 to 2010.
1. Int J Environ Res Public Health - published April 14, 2014
2. Yang W., Chen B., Cui X.
Anti-inflammatory effects of the chinese herbal formula sini tang in myocardial infarction rats.
1. Evid Based Complement Alternat Med - published April 12, 2014
2. Liu J, Peter K, Shi D, Zhang L, Dong G, Zhang D, Breiteneder H, Bauer R, Jakowitsch J, Ma Y
MYC protein expression is associated with poor prognosis in diffuse large B cell lymphoma patients treated with RCHOP chemotherapy.
1. Tumour Biol - published April 11, 2014
2. Zhou M., Wang J., Ouyang J., Xu JY., Chen B., Zhang QG., Zhou RF., Yang YG., Shao XY., Xu Y., Chen YM., Fan XS., Wu HY.
A single oncogenic enhancer rearrangement causes concomitant EVI1 and GATA2 deregulation in leukemia.
1. Cell - published April 10, 2014
2. Gröschel S., Sanders MA., Hoogenboezem R., de Wit E., Bouwman BA., Erpelinck C., van der Velden VH., Havermans M., Avellino R., van Lom K., Rombouts EJ., van Duin M., Döhner K., Beverloo HB., Bradner JE., Döhner H., Löwenberg B., Valk PJ., Bindels EM., de Laat W., Delwel R.
Regulating the ribosome: a spotlight on RNA dark matter.
1. Mol Cell - published April 10, 2014
2. Lintner NG., Cate JH.
Interplay between base excision repair activity and toxicity of 3-methyladenine DNA glycosylases in an E. coli complementation system.
1. Mutat Res - published April 9, 2014
2. Troll CJ, Adhikary S, Cueff M, Mitra I, Eichman BF, Camps M
Biochemical properties and atomic resolution structure of a proteolytically processed β-mannanase from cellulolytic Streptomyces sp. SirexAA-E.
1. PLoS One - published April 9, 2014
2. Takasuka TE, Acheson JF, Bianchetti CM, Prom BM, Bergeman LF, Book AJ, Currie CR, Fox BG
Crenolanib is a selective type I pan-FLT3 inhibitor.
1. Proc Natl Acad Sci U S A - published April 8, 2014
2. Smith CC, Lasater EA, Lin KC, Wang Q, McCreery MQ, Stewart WK, Damon LE, Perl AE, Jeschke GR, Sugita M, Carroll M, Kogan SC, Kuriyan J, Shah NP
The structure and assembly mechanism of a novel three-stranded tubulin filament that centers phage DNA.
1. Structure - published April 8, 2014
2. Zehr EA, Kraemer JA, Erb ML, Coker JK, Montabana EA, Pogliano J, Agard DA
Temperature-dependent solvation modulates the dimensions of disordered proteins.
1. Proc Natl Acad Sci U S A - published April 8, 2014
2. Wuttke R, Hofmann H, Nettels D, Borgia MB, Mittal J, Best RB, Schuler B
Fungal prion HET-s as a model for structural complexity and self-propagation in prions.
1. Proc Natl Acad Sci U S A - published April 8, 2014
2. Wan W, Stubbs G
Structural basis for the assembly of the mitotic motor Kinesin-5 into bipolar tetramers.
1. Elife - published April 8, 2014
2. Scholey JE., Nithianantham S., Scholey JM., Al-Bassam J.
A random sequential mechanism of aminoglycoside acetylation by Mycobacterium tuberculosis Eis protein.
1. PLoS One - published April 5, 2014
2. Tsodikov OV, Green KD, Garneau-Tsodikova S
A novel mechanism by which tissue transglutaminase activates signaling events that promote cell survival.
1. J Biol Chem - published April 4, 2014
2. Boroughs LK, Antonyak MA, Cerione RA
Hot biological catalysis: isothermal titration calorimetry to characterize enzymatic reactions.
1. J Vis Exp - published April 4, 2014
2. Mazzei L, Ciurli S, Zambelli B
Mutations in UBA3 confer resistance to the NEDD8-activating enzyme inhibitor MLN4924 in human leukemic cells.
1. PLoS One - published April 3, 2014
2. Xu GW, Toth JI, da Silva SR, Paiva SL, Lukkarila JL, Hurren R, Maclean N, Sukhai MA, Bhattacharjee RN, Goard CA, Medeiros B, Gunning PT, Dhe-Paganon S, Petroski MD, Schimmer AD
Kinome-wide functional analysis highlights the role of cytoskeletal remodeling in somatic cell reprogramming.
1. Cell Stem Cell - published April 3, 2014
2. Sakurai K., Talukdar I., Patil VS., Dang J., Li Z., Chang KY., Lu CC., Delorme-Walker V., Dermardirossian C., Anderson K., Hanein D., Yang CS., Wu D., Liu Y., Rana TM.
Dph7 catalyzes a previously unknown demethylation step in diphthamide biosynthesis.
1. J Am Chem Soc - published April 3, 2014
2. Lin Z, Su X, Chen W, Ci B, Zhang S, Lin H
Next-generation heteronuclear decoupling for high-field biomolecular NMR spectroscopy.
1. Angew Chem Int Ed Engl - published April 2, 2014
2. Schilling F, Warner LR, Gershenzon NI, Skinner TE, Sattler M, Glaser SJ
Conformational dynamics at the inner gate of KcsA during activation.
1. Biochemistry - published April 2, 2014
2. Hulse RE, Sachleben JR, Wen PC, Moradi M, Tajkhorshid E, Perozo E
RETRACTED: An ATP-competitive inhibitor modulates the allosteric function of the HER3 pseudokinase.
1. Chem Biol - published April 2, 2014
2. Littlefield P, Moasser MM, Jura N
5-methylcytosine recognition by Arabidopsis thaliana DNA glycosylases DEMETER and DML3.
1. Biochemistry - published April 2, 2014
2. Brooks SC, Fischer RL, Huh JH, Eichman BF
Reconstruction of SAXS Profiles from Protein Structures.
1. Comput Struct Biotechnol J - published April 2, 2014
2. Putnam DK, Lowe EW Jr, Meiler J
Solution and crystal structures of a C-terminal fragment of the neuronal isoform of the polypyrimidine tract binding protein (nPTB).
1. PeerJ - published April 2, 2014
2. Joshi A, Esteve V, Buckroyd AN, Blatter M, Allain FH, Curry S
Inverted topologies in membrane proteins: a mini-review.
1. Comput Struct Biotechnol J - published April 2, 2014
2. Duran AM, Meiler J
Capturing RNA-dependent pathways for cryo-EM analysis.
1. Comput Struct Biotechnol J - published April 2, 2014
2. Tanner JR, Degen K, Gilmore BL, Kelly DF
Molecular mechanism of Mg2+-dependent gating in CorA.
1. Nat Commun - published April 2, 2014
2. Dalmas O, Sompornpisut P, Bezanilla F, Perozo E
Human CLP1 mutations alter tRNA biogenesis, affecting both peripheral and central nervous system function.
1. Cell - published April 2, 2014
2. Karaca E, Weitzer S, Pehlivan D, Shiraishi H, Gogakos T, Hanada T, Jhangiani SN, Wiszniewski W, Withers M, Campbell IM, Erdin S, Isikay S, Franco LM, Gonzaga-Jauregui C, Gambin T, Gelowani V, Hunter JV, Yesil G, Koparir E, Yilmaz S, Brown M, Briskin D, Hafner M, Morozov P, Farazi TA, Bernreuther C, Glatzel M, Trattnig S, Friske J, Kronnerwetter C, Bainbridge MN, Gezdirici A, Seven M, Muzny DM, Boerwinkle E, Ozen M, Baylor Hopkins Center for Mendelian Genomics., Clausen T, Tuschl T, Yuksel A, Hess A, Gibbs RA, Martinez J, Penninger JM, Lupski JR
¹⁵N, ¹³C and ¹H resonance assignments and secondary structure determination of a variable heavy domain of a heavy chain antibody.
1. Biomol NMR Assign - published April 1, 2014
2. Prosser CE, Waters LC, Muskett FW, Veverka V, Addis PW, Griffin LM, Baker TS, Lawson AD, Wernery U, Kinne J, Henry AJ, Taylor RJ, Carr MD
An overview of tools for the validation of protein NMR structures.
1. J Biomol NMR - published April 1, 2014
2. Vuister GW, Fogh RH, Hendrickx PM, Doreleijers JF, Gutmanas A
BCL::Fold--protein topology determination from limited NMR restraints.
1. Proteins - published April 1, 2014
2. Weiner BE, Alexander N, Akin LR, Woetzel N, Karakas M, Meiler J
Glutaminase regulation in cancer cells: a druggable chain of events.
1. Drug Discov Today - published April 1, 2014
2. Katt WP, Cerione RA
Improved microchip design and application for in situ transmission electron microscopy of macromolecules.
1. Microsc Microanal - published April 1, 2014
2. Dukes MJ, Thomas R, Damiano J, Klein KL, Balasubramaniam S, Kayandan S, Riffle JS, Davis RM, McDonald SM, Kelly DF
Insights into the structure and assembly of the bacteriophage 29 double-stranded DNA packaging motor.
1. J Virol - published April 1, 2014
2. Cao S, Saha M, Zhao W, Jardine PJ, Zhang W, Grimes S, Morais MC
Myosin chaperones.
1. Curr Opin Struct Biol - published April 1, 2014
2. Hellerschmied D, Clausen T
Inhibition of KRAS-driven tumorigenicity by interruption of an autocrine cytokine circuit.
1. Cancer Discov - published April 1, 2014
2. Zhu Z, Aref AR, Cohoon TJ, Barbie TU, Imamura Y, Yang S, Moody SE, Shen RR, Schinzel AC, Thai TC, Reibel JB, Tamayo P, Godfrey JT, Qian ZR, Page AN, Maciag K, Chan EM, Silkworth W, Labowsky MT, Rozhansky L, Mesirov JP, Gillanders WE, Ogino S, Hacohen N, Gaudet S, Eck MJ, Engelman JA, Corcoran RB, Wong KK, Hahn WC, Barbie DA
Transportin acts to regulate mitotic assembly events by target binding rather than Ran sequestration.
1. Mol Biol Cell - published April 1, 2014
2. Bernis C, Swift-Taylor B, Nord M, Carmona S, Chook YM, Forbes DJ
Structure and function of steroid receptor RNA activator protein, the proposed partner of SRA noncoding RNA.
1. J Mol Biol - published April 1, 2014
2. McKay DB, Xi L, Barthel KKB, Cech TR
Segmented negative strand RNA virus nucleoprotein structure.
1. Curr Opin Virol - published April 1, 2014
2. Reguera J, Cusack S, Kolakofsky D
A novel missense mutation in POMT1 modulates the severe congenital muscular dystrophy phenotype associated with POMT1 nonsense mutations.
1. Neuromuscul Disord - published April 1, 2014
2. Wallace SE, Conta JH, Winder TL, Willer T, Eskuri JM, Haas R, Patterson K, Campbell KP, Moore SA, Gospe SM Jr
Human full-length coagulation factor X and a GLA domain-derived 40-mer polypeptide bind to different regions of the adenovirus serotype 5 hexon capsomer.
1. Hum Gene Ther - published April 1, 2014
2. Sumarheni S, Hong SS, Josserand V, Coll JL, Boulanger P, Schoehn G, Fender P
Molecular basis for the wide range of affinity found in Csr/Rsm protein-RNA recognition.
1. Nucleic Acids Res - published April 1, 2014
2. Duss O, Michel E, Diarra dit Konté N, Schubert M, Allain FH
Vfa1 binds to the N-terminal microtubule-interacting and trafficking (MIT) domain of Vps4 and stimulates its ATPase activity.
1. J Biol Chem - published April 1, 2014
2. Vild CJ, Xu Z
A novel method to measure HLA-DM-susceptibility of peptides bound to MHC class II molecules based on peptide binding competition assay and differential IC(50) determination.
1. J Immunol Methods - published April 1, 2014
2. Yin L, Stern LJ
Molecular functions of the TLE tetramerization domain in Wnt target gene repression.
1. EMBO J - published April 1, 2014
2. Chodaparambil JV, Pate KT, Hepler MR, Tsai BP, Muthurajan UM, Luger K, Waterman ML, Weis WI
Application of encoded library technology (ELT) to a protein-protein interaction target: discovery of a potent class of integrin lymphocyte function-associated antigen 1 (LFA-1) antagonists.
1. Bioorg Med Chem - published April 1, 2014
2. Kollmann CS, Bai X, Tsai CH, Yang H, Lind KE, Skinner SR, Zhu Z, Israel DI, Cuozzo JW, Morgan BA, Yuki K, Xie C, Springer TA, Shimaoka M, Evindar G
A transient interaction between the phosphate binding loop and switch I contributes to the allosteric network between receptor and nucleotide in Gαi1.
1. J Biol Chem - published April 1, 2014
2. Thaker TM, Sarwar M, Preininger AM, Hamm HE, Iverson TM
Automated particle picking for low-contrast macromolecules in cryo-electron microscopy.
1. J Struct Biol - published April 1, 2014
2. Langlois R, Pallesen J, Ash JT, Nam Ho D, Rubinstein JL, Frank J
Purification and structural study of the voltage-sensor domain of the human KCNQ1 potassium ion channel.
1. Biochemistry - published April 1, 2014
2. Peng D, Kim JH, Kroncke BM, Law CL, Xia Y, Droege KD, Van Horn WD, Vanoye CG, Sanders CR
Synthesis and incorporation of the phosphoramidite derivative of 2'-O-photocaged 3'-s-thioguanosine into oligoribonucleotides: substrate for probing the mechanism of RNA catalysis.
1. J Org Chem - published April 1, 2014
2. Li NS, Tuttle N, Staley JP, Piccirilli JA
Structural diversity of ABC transporters.
1. J Gen Physiol - published April 1, 2014
2. ter Beek J, Guskov A, Slotboom DJ
Structures of the Toxoplasma gliding motility adhesin.
1. Proc Natl Acad Sci U S A - published April 1, 2014
2. Song G, Springer TA
Short peptides self-assemble to produce catalytic amyloids.
1. Nat Chem - published April 1, 2014
2. Rufo CM, Moroz YS, Moroz OV, Stöhr J, Smith TA, Hu X, DeGrado WF, Korendovych IV
Sparse labeling of proteins: structural characterization from long range constraints.
1. J Magn Reson - published April 1, 2014
2. Prestegard JH, Agard DA, Moremen KW, Lavery LA, Morris LC, Pederson K
Excision of 5-hydroxymethylcytosine by DEMETER family DNA glycosylases.
1. Biochem Biophys Res Commun - published April 1, 2014
2. Jang H, Shin H, Eichman BF, Huh JH
Revealing CD38 cellular localization using a cell permeable, mechanism-based fluorescent small-molecule probe.
1. J Am Chem Soc - published April 1, 2014
2. Shrimp JH, Hu J, Dong M, Wang BS, MacDonald R, Jiang H, Hao Q, Yen A, Lin H
Fiber diffraction of the prion-forming domain HET-s(218-289) shows dehydration-induced deformation of a complex amyloid structure.
1. Biochemistry - published April 1, 2014
2. Wan W, Stubbs G
The effect of intrachain electrostatic repulsion on conformational disorder and dynamics of the Sic1 protein.
1. J Phys Chem B - published April 1, 2014
2. Liu B, Chia D, Csizmok V, Farber P, Forman-Kay JD, Gradinaru CC
Recent developments in biased agonism.
1. Curr Opin Cell Biol - published April 1, 2014
2. Wisler JW, Xiao K, Thomsen AR, Lefkowitz RJ
Phosphoinositide-mediated oligomerization of a defensin induces cell lysis.
1. Elife - published April 1, 2014
2. Poon IKh, Baxter AA, Lay FT, Mills GD, Adda CG, Payne JA, Phan TK, Ryan GF, White JA, Veneer PK, van der Weerden NL, Anderson MA, Kvansakul M, Hulett MD
The structures of cytosolic and plastid-located glutamine synthetases from Medicago truncatula reveal a common and dynamic architecture.
1. Acta Crystallogr D Biol Crystallogr - published April 1, 2014
2. Torreira E, Seabra AR, Marriott H, Zhou M, Llorca Ó, Robinson CV, Carvalho HG, Fernández-Tornero C, Pereira PJ
New insights into ubiquitin E3 ligase mechanism.
1. Nat Struct Mol Biol - published April 1, 2014
2. Berndsen CE, Wolberger C
Plant ubiquitin ligases as signaling hubs.
1. Nat Struct Mol Biol - published April 1, 2014
2. Shabek N, Zheng N
The docking protein FRS2α is a critical regulator of VEGF receptors signaling.
1. Proc Natl Acad Sci U S A - published April 1, 2014
2. Chen PY, Qin L, Zhuang ZW, Tellides G, Lax I, Schlessinger J, Simons M
Vivid watercolor paintbox for eukaryotic algae.
1. Proc Natl Acad Sci U S A - published April 1, 2014
2. Forest KT
Binding of glutathione to enterovirus capsids is essential for virion morphogenesis.
1. PLoS Pathog - published April 1, 2014
2. Thibaut HJ, van der Linden L, Jiang P, Thys B, Canela MD, Aguado L, Rombaut B, Wimmer E, Paul A, Pérez-Pérez MJ, van Kuppeveld FJ, Neyts J
Escape from neutralization by the respiratory syncytial virus-specific neutralizing monoclonal antibody palivizumab is driven by changes in on-rate of binding to the fusion protein.
1. Virology - published April 1, 2014
2. Bates JT, Keefer CJ, Slaughter JC, Kulp DW, Schief WR, Crowe JE Jr
Development of fluorescent substrates and assays for the key autophagy-related cysteine protease enzyme, ATG4B.
1. Assay Drug Dev Technol - published April 1, 2014
2. Nguyen TG, Honson NS, Arns S, Davis TL, Dhe-Paganon S, Kovacic S, Kumar NS, Pfeifer TA, Young RN
Potent dengue virus neutralization by a therapeutic antibody with low monovalent affinity requires bivalent engagement.
1. PLoS Pathog - published April 1, 2014
2. Edeling MA, Austin SK, Shrestha B, Dowd KA, Mukherjee S, Nelson CA, Johnson S, Mabila MN, Christian EA, Rucker J, Pierson TC, Diamond MS, Fremont DH
Modified vaccinia virus Ankara triggers type I IFN production in murine conventional dendritic cells via a cGAS/STING-mediated cytosolic DNA-sensing pathway.
1. PLoS Pathog - published April 1, 2014
2. Dai P, Wang W, Cao H, Avogadri F, Dai L, Drexler I, Joyce JA, Li XD, Chen Z, Merghoub T, Shuman S, Deng L
Architecture of viral genome-delivery molecular machines.
1. Curr Opin Struct Biol - published April 1, 2014
2. Bhardwaj A, Olia AS, Cingolani G
Parts, assembly and operation of the RIG-I family of motors.
1. Curr Opin Struct Biol - published April 1, 2014
2. Rawling DC, Pyle AM
Generation and study of the strains of streptomycetes - heterologous hosts for production of moenomycin.
1. Russ J Genet - published April 1, 2014
2. Lopatniuk M, Ostash B, Luzhetskyy A, Walker S, Fedorenko V