Member Publications
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66 Member Publications for June 2013
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Arrestins come of age: a personal historical perspective.
- Prog Mol Biol Transl Sci - published June 15, 2013
- Lefkowitz RJ
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Small-molecule ligand docking into comparative models with Rosetta.
- Nat Protoc - published June 8, 2013
- Combs SA, Deluca SL, Deluca SH, Lemmon GH, Nannemann DP, Nguyen ED, Willis JR, Sheehan JH, Meiler J
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Energetics and location of phosphoinositide binding in human Kir2.1 channels.
- J Biol Chem - published June 7, 2013
- D'Avanzo N, Lee SJ, Cheng WWL, Nichols CG
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Large lateral movement of transmembrane helix S5 is not required for substrate access to the active site of rhomboid intramembrane protease.
- J Biol Chem - published June 7, 2013
- Xue Y, Ha Y
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Fixing a hole where the Ras gets in.
- Cell - published June 6, 2013
- Iwig JS, Kuriyan J
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Differential impact of β and γ residue preorganization on α/β/γ-peptide helix stability in water.
- J Am Chem Soc - published June 5, 2013
- Shin YH, Mortenson DE, Satyshur KA, Forest KT, Gellman SH
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Architecture of human translation initiation factor 3.
- Structure - published June 4, 2013
- Querol-Audi J, Sun C, Vogan JM, Smith MD, Gu Y, Cate JH, Nogales E
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The 3.2 Å resolution structure of a receptor: CheA:CheW signaling complex defines overlapping binding sites and key residue interactions within bacterial chemosensory arrays.
- Biochemistry - published June 4, 2013
- Li X, Fleetwood AD, Bayas C, Bilwes AM, Ortega DR, Falke JJ, Zhulin IB, Crane BR
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Crystal structure of the DNA cytosine deaminase APOBEC3F: the catalytically active and HIV-1 Vif-binding domain.
- Structure - published June 4, 2013
- Bohn MF, Shandilya SM, Albin JS, Kouno T, Anderson BD, McDougle RM, Carpenter MA, Rathore A, Evans L, Davis AN, Zhang J, Lu Y, Somasundaran M, Matsuo H, Harris RS, Schiffer CA
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Structural basis for highly effective HIV-1 neutralization by CD4-mimetic miniproteins revealed by 1.5 Å cocrystal structure of gp120 and M48U1.
- Structure - published June 4, 2013
- Acharya P, Luongo TS, Louder MK, McKee K, Yang Y, Kwon YD, Mascola JR, Kessler P, Martin L, Kwong PD
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Cryo-EM visualization of the ribosome in termination complex with apo-RF3 and RF1.
- Elife - published June 4, 2013
- Pallesen J, Hashem Y, Korkmaz G, Koripella RK, Huang C, Ehrenberg M, Sanyal S, Frank J
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Restricting HIV-1 pathways for escape using rationally designed anti-HIV-1 antibodies.
- J Exp Med - published June 3, 2013
- Diskin R, Klein F, Horwitz JA, Halper-Stromberg A, Sather DN, Marcovecchio PM, Lee T, West AP Jr, Gao H, Seaman MS, Stamatatos L, Nussenzweig MC, Bjorkman PJ
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In Silico screening on the three-dimensional model of the Plasmodium vivax SUB1 protease leads to the validation of a novel anti-parasite compound.
- J Biol Chem - published June 2, 2013
- Bouillon A, Giganti D, Benedet C, Gorgette O, Pêtres S, Crublet E, Girard-Blanc C, Witkowski B, Ménard D, Nilges M, Mercereau-Puijalon O, Stoven V, Barale JC
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Fusion of dioxygenase and lignin-binding domains in a novel secreted enzyme from cellulolytic Streptomyces sp. SirexAA-E.
- J Biol Chem - published June 2, 2013
- Bianchetti CM, Harmann CH, Takasuka TE, Hura GL, Dyer K, Fox BG
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The linear ubiquitin-specific deubiquitinase gumby regulates angiogenesis.
- Nature - published June 2, 2013
- Rivkin E, Almeida SM, Ceccarelli DF, Juang YC, MacLean TA, Srikumar T, Huang H, Dunham WH, Fukumura R, Xie G, Gondo Y, Raught B, Gingras AC, Sicheri F, Cordes SP
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Prenylation and membrane localization of Cdc42 are essential for activation by DOCK7.
- Biochemistry - published June 2, 2013
- Zhou Y, Johnson JL, Cerione RA, Erickson JW
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Highly stereocontrolled total synthesis of β-D-mannosyl phosphomycoketide: a natural product from Mycobacterium tuberculosis.
- J Org Chem - published June 2, 2013
- Li NS, Scharf L, Adams EJ, Piccirilli JA
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Unusual architecture of the p7 channel from hepatitis C virus.
- Nature - published June 2, 2013
- OuYang B, Xie S, Berardi MJ, Zhao X, Dev J, Yu W, Sun B, Chou JJ
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The making of a slicer: activation of human Argonaute-1.
- Cell Rep - published June 2, 2013
- Faehnle CR, Elkayam E, Haase AD, Hannon GJ, Joshua-Tor L
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Substrate-selective repair and restart of replication forks by DNA translocases.
- Cell Rep - published June 2, 2013
- Bétous R, Couch FB, Mason AC, Eichman BF, Manosas M, Cortez D
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Computational analysis of anti-HIV-1 antibody neutralization panel data to identify potential functional epitope residues.
- Proc Natl Acad Sci U S A - published June 2, 2013
- West AP Jr, Scharf L, Horwitz J, Klein F, Nussenzweig MC, Bjorkman PJ
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Cys-pair reporters detect a constrained trigger loop in a paused RNA polymerase.
- Mol Cell - published June 2, 2013
- Nayak D, Voss M, Windgassen T, Mooney RA, Landick R
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Endocytosis and recycling of immune complexes by follicular dendritic cells enhances B cell antigen binding and activation.
- Immunity - published June 2, 2013
- Heesters BA, Chatterjee P, Kim YA, Gonzalez SF, Kuligowski MP, Kirchhausen T, Carroll MC
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Structural basis for recognizing phosphoarginine and evolving residue-specific protein phosphatases in gram-positive bacteria.
- Cell Rep - published June 2, 2013
- Fuhrmann J, Mierzwa B, Trentini DB, Spiess S, Lehner A, Charpentier E, Clausen T
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A mechanism for the upregulation of EGF receptor levels in glioblastomas.
- Cell Rep - published June 2, 2013
- Zhang J, Antonyak MA, Singh G, Cerione RA
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Structural and stereochemical analysis of a modular polyketide synthase ketoreductase domain required for the generation of a cis-alkene.
- Chem Biol - published June 2, 2013
- Bonnett SA, Whicher JR, Papireddy K, Florova G, Smith JL, Reynolds KA
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Bromodomain proteins in HIV infection.
- Viruses - published June 2, 2013
- Boehm D, Conrad RJ, Ott M
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Knowledge-based design of a biosensor to quantify localized ERK activation in living cells.
- Chem Biol - published June 2, 2013
- Kummer L, Hsu CW, Dagliyan O, MacNevin C, Kaufholz M, Zimmermann B, Dokholyan NV, Hahn KM, Plückthun A
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Complete integrin headpiece opening in eight steps.
- J Cell Biol - published June 2, 2013
- Zhu J, Zhu J, Springer TA
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Macromolecular juggling by ubiquitylation enzymes.
- BMC Biol - published June 2, 2013
- Lorenz S, Cantor AJ, Rape M, Kuriyan J
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Eukaryote-specific insertion elements control human ARGONAUTE slicer activity.
- Cell Rep - published June 2, 2013
- Nakanishi K, Ascano M, Gogakos T, Ishibe-Murakami S, Serganov AA, Briskin D, Morozov P, Tuschl T, Patel DJ
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RNA recognition by double-stranded RNA binding domains: a matter of shape and sequence.
- Cell Mol Life Sci - published June 1, 2013
- Masliah G, Barraud P, Allain FH
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BST-2/tetherin: structural biology, viral antagonism, and immunobiology of a potent host antiviral factor.
- Mol Immunol - published June 1, 2013
- Swiecki M, Omattage NS, Brett TJ
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Estimating selection on synonymous codon usage from noisy experimental data.
- Mol Biol Evol - published June 1, 2013
- Wallace EW, Airoldi EM, Drummond DA
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Extensive mutagenesis of the HSV-1 gB ectodomain reveals remarkable stability of its postfusion form.
- J Mol Biol - published June 1, 2013
- Vitu E, Sharma S, Stampfer SD, Heldwein EE
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Human monoclonal antibodies derived from memory B cells following live attenuated dengue virus vaccination or natural infection exhibit similar characteristics.
- J Infect Dis - published June 1, 2013
- Smith SA, de Alwis R, Kose N, Durbin AP, Whitehead SS, de Silva AM, Crowe JE Jr
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Molecular cloning and characterization of sea bass (Dicentrarchus labrax, L.) calreticulin.
- Fish Shellfish Immunol - published June 1, 2013
- Pinto RD, Moreira AR, Pereira PJ, dos Santos NM
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Crystal structure of human Karyopherin β2 bound to the PY-NLS of Saccharomyces cerevisiae Nab2.
- J Struct Funct Genomics - published June 1, 2013
- Soniat M, Sampathkumar P, Collett G, Gizzi AS, Banu RN, Bhosle RC, Chamala S, Chowdhury S, Fiser A, Glenn AS, Hammonds J, Hillerich B, Khafizov K, Love JD, Matikainen B, Seidel RD, Toro R, Rajesh Kumar P, Bonanno JB, Chook YM, Almo SC
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Improved expression and purification of sigma 1 receptor fused to maltose binding protein by alteration of linker sequence.
- Protein Expr Purif - published June 1, 2013
- Gromek KA, Meddaugh HR, Wrobel RL, Suchy FP, Bingman CA, Primm JG, Fox BG
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The three-dimensional structure of TrmB, a transcriptional regulator of dual function in the hyperthermophilic archaeon Pyrococcus furiosus in complex with sucrose.
- Protein Sci - published June 1, 2013
- Krug M, Lee SJ, Boos W, Diederichs K, Welte W
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Chemical modulation of chaperone-mediated autophagy by retinoic acid derivatives.
- Nat Chem Biol - published June 1, 2013
- Anguiano J, Garner TP, Mahalingam M, Das BC, Gavathiotis E, Cuervo AM
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RNA recognition by the DNA end-binding Ku heterodimer.
- RNA - published June 1, 2013
- Dalby AB, Goodrich KJ, Pfingsten JS, Cech TR
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Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM.
- Nat Methods - published June 1, 2013
- Li X, Mooney P, Zheng S, Booth CR, Braunfeld MB, Gubbens S, Agard DA, Cheng Y
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A brief history of G-protein coupled receptors (Nobel Lecture).
- Angew Chem Int Ed Engl - published June 1, 2013
- Lefkowitz RJ
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Roles of two large serine recombinases in mobilizing the methicillin-resistance cassette SCCmec.
- Mol Microbiol - published June 1, 2013
- Misiura A, Pigli YZ, Boyle-Vavra S, Daum RS, Boocock MR, Rice PA
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Structure of the UreD-UreF-UreG-UreE complex in Helicobacter pylori: a model study.
- J Biol Inorg Chem - published June 1, 2013
- Biagi F, Musiani F, Ciurli S
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Reversal of the substrate specificity of CMP N-glycosidase to dCMP.
- Biochemistry - published June 1, 2013
- Sikowitz MD, Cooper LE, Begley TP, Kaminski PA, Ealick SE
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CD4+ T cells provide intermolecular help to generate robust antibody responses in vaccinia virus-vaccinated humans.
- J Immunol - published June 1, 2013
- Yin L, Calvo-Calle JM, Cruz J, Newman FK, Frey SE, Ennis FA, Stern LJ
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Automatic processing of macromolecular crystallography X-ray diffraction data at the ESRF.
- J Appl Crystallogr - published June 1, 2013
- Monaco S, Gordon E, Bowler MW, Delagenière S, Guijarro M, Spruce D, Svensson O, McSweeney SM, McCarthy AA, Leonard G, Nanao MH
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Systemic ceramide accumulation leads to severe and varied pathological consequences.
- EMBO Mol Med - published June 1, 2013
- Alayoubi AM, Wang JC, Au BC, Carpentier S, Garcia V, Dworski S, El-Ghamrasni S, Kirouac KN, Exertier MJ, Xiong ZJ, Privé GG, Simonaro CM, Casas J, Fabrias G, Schuchman EH, Turner PV, Hakem R, Levade T, Medin JA
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Fragment-based drug discovery using NMR spectroscopy.
- J Biomol NMR - published June 1, 2013
- Harner MJ, Frank AO, Fesik SW
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Resolution of structural heterogeneity in dynamic crystallography.
- Acta Crystallogr D Biol Crystallogr - published June 1, 2013
- Ren Z, Chan PW, Moffat K, Pai EF, Royer WE Jr, Šrajer V, Yang X
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High-resolution structures of the IgM Fc domains reveal principles of its hexamer formation.
- Proc Natl Acad Sci U S A - published June 1, 2013
- Müller R, Gräwert MA, Kern T, Madl T, Peschek J, Sattler M, Groll M, Buchner J
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Structures of KOD and 9°N DNA polymerases complexed with primer template duplex.
- Chembiochem - published June 1, 2013
- Bergen K, Betz K, Welte W, Diederichs K, Marx A
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Neisseria gonorrhoeae-derived heptose elicits an innate immune response and drives HIV-1 expression.
- Proc Natl Acad Sci U S A - published June 1, 2013
- Malott RJ, Keller BO, Gaudet RG, McCaw SE, Lai CC, Dobson-Belaire WN, Hobbs JL, St Michael F, Cox AD, Moraes TF, Gray-Owen SD
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Modulating cell-to-cell variability and sensitivity to death ligands by co-drugging.
- Phys Biol - published June 1, 2013
- Flusberg DA, Sorger PK
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X-ray structure of the mammalian GIRK2-βγ G-protein complex.
- Nature - published June 1, 2013
- Whorton MR, MacKinnon R
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Temporospatial expression of Dmrt1 in chicken urogenital system (Gallus gallus) using whole mount in situ hybridization.
- Acta Biol Hung - published June 1, 2013
- Yang Y, Gong P, Feng YP, Li SJ, Peng XL, Ran ZP, Qian YG, Gong YZ
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How the antiviral immune response boosts liver fat.
- Nat Med - published June 1, 2013
- Camus G, Ott M
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The non-pathogenic Escherichia coli strain W secretes SslE via the virulence-associated type II secretion system beta.
- BMC Microbiol - published June 1, 2013
- Decanio MS, Landick R, Haft RJ
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Properties of native brain α-synuclein.
- Nature - published June 1, 2013
- Burré J, Vivona S, Diao J, Sharma M, Brunger AT, Südhof TC
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Three rules for HIV latency: location, location, and location.
- Cell Host Microbe - published June 1, 2013
- Ott M, Verdin E
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Estrogen and recurrent UTI: what are the facts?
- Sci Transl Med - published June 1, 2013
- Hannan TJ, Hooton TM, Hultgren SJ
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Scaffold nucleoporins Nup188 and Nup192 share structural and functional properties with nuclear transport receptors.
- Elife - published June 1, 2013
- Andersen KR, Onischenko E, Tang JH, Kumar P, Chen JZ, Ulrich A, Liphardt JT, Weis K, Schwartz TU
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Genome-scale analysis of escherichia coli FNR reveals complex features of transcription factor binding.
- PLoS Genet - published June 1, 2013
- Myers KS, Yan H, Ong IM, Chung D, Liang K, Tran F, Keleş S, Landick R, Kiley PJ
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Corrigendum to "The Discovery, Engineering and Characterisation of a Highly Potent Anti-Human IL-13 Fab Fragment Designed for Administration by Inhalation" [J. Mol. Biol. 425 (2013), 577-593].
- J Mol Biol - published June 1, 2013
- Lightwood D, O'Dowd V, Carrington B, Veverka V, Carr MD, Tservistas M, Henry AJ, Smith B, Tyson K, Lamour S, Bracher M, Sarkar K, Turner A, Lawson AD, Bourne T, Gozzard N, Palframan R