Member Publications

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61 Member Publications for May 2013

Examining the pathogenesis of breast cancer using a novel agent-based model of mammary ductal epithelium dynamics.
1. PLoS One - published May 25, 2013
2. Chapa J, Bourgo RJ, Greene GL, Kulkarni S, An G
A UDP-X diphosphatase from Streptococcus pneumoniae hydrolyzes precursors of peptidoglycan biosynthesis.
1. PLoS One - published May 22, 2013
2. Duong-Ly KC, Woo HN, Dunn CA, Xu W, Babič A, Bessman MJ, Amzel LM, Gabelli SB
Human rotavirus VP6-specific antibodies mediate intracellular neutralization by binding to a quaternary structure in the transcriptional pore.
1. PLoS One - published May 15, 2013
2. Aiyegbo MS, Sapparapu G, Spiller BW, Eli IM, Williams DR, Kim R, Lee DE, Liu T, Li S, Woods VL Jr, Nannemann DP, Meiler J, Stewart PL, Crowe JE Jr
Sphingolipid depletion impairs endocytic traffic and inhibits Wingless signaling.
1. Mech Dev - published May 14, 2013
2. Pepperl J, Reim G, Lüthi U, Kaech A, Hausmann G, Basler K
mTOR kinase structure, mechanism and regulation.
1. Nature - published May 9, 2013
2. Yang H, Rudge DG, Koos JD, Vaidialingam B, Yang HJ, Pavletich NP
Genomic diversity and fitness of E. coli strains recovered from the intestinal and urinary tracts of women with recurrent urinary tract infection.
1. Sci Transl Med - published May 8, 2013
2. Chen SL, Wu M, Henderson JP, Hooton TM, Hibbing ME, Hultgren SJ, Gordon JI
Plum, an immunoglobulin superfamily protein, regulates axon pruning by facilitating TGF-β signaling.
1. Neuron - published May 8, 2013
2. Yu XM, Gutman I, Mosca TJ, Iram T, Ozkan E, Garcia KC, Luo L, Schuldiner O
Substrate-induced conformational changes in the S-component ThiT from an energy coupling factor transporter.
1. Structure - published May 7, 2013
2. Majsnerowska M, Hänelt I, Wunnicke D, Schäfer LV, Steinhoff HJ, Slotboom DJ
Mass spectrometry based method to increase throughput for kinome analyses using ATP probes.
1. Anal Chem - published May 7, 2013
2. McAllister FE, Niepel M, Haas W, Huttlin E, Sorger PK, Gygi SP
The molecular basis for Mucosal-Associated Invariant T cell recognition of MR1 proteins.
1. Proc Natl Acad Sci U S A - published May 7, 2013
2. López-Sagaseta J, Dulberger CL, Crooks JE, Parks CD, Luoma AM, McFedries A, Van Rhijn I, Saghatelian A, Adams EJ
Readout of epigenetic modifications.
1. Annu Rev Biochem - published May 7, 2013
2. Patel DJ, Wang Z
Structure and mechanism of rhomboid protease.
1. J Biol Chem - published May 3, 2013
2. Ha Y, Akiyama Y, Xue Y
An autoinhibited structure of α-catenin and its implications for vinculin recruitment to adherens junctions.
1. J Biol Chem - published May 3, 2013
2. Ishiyama N, Tanaka N, Abe K, Yang YJ, Abbas YM, Umitsu M, Nagar B, Bueler SA, Rubinstein JL, Takeichi M, Ikura M
Development of a highly protective combination monoclonal antibody therapy against Chikungunya virus.
1. PLoS Pathog - published May 3, 2013
2. Pal P, Dowd KA, Brien JD, Edeling MA, Gorlatov S, Johnson S, Lee I, Akahata W, Nabel GJ, Richter MK, Smit JM, Fremont DH, Pierson TC, Heise MT, Diamond MS
Mutations in FLS2 Ser-938 dissect signaling activation in FLS2-mediated Arabidopsis immunity.
1. PLoS Pathog - published May 3, 2013
2. Cao Y, Aceti DJ, Sabat G, Song J, Makino S, Fox BG, Bent AF
Crystal structure of a nitrate/nitrite exchanger.
1. Nature - published May 3, 2013
2. Zheng H, Wisedchaisri G, Gonen T
Discovering RNA-protein interactome by using chemical context profiling of the RNA-protein interface.
1. Cell Rep - published May 3, 2013
2. Parisien M, Wang X, Perdrizet G 2nd, Lamphear C, Fierke CA, Maheshwari KC, Wilde MJ, Sosnick TR, Pan T
A conserved role for atlastin GTPases in regulating lipid droplet size.
1. Cell Rep - published May 3, 2013
2. Klemm RW, Norton JP, Cole RA, Li CS, Park SH, Crane MM, Li L, Jin D, Boye-Doe A, Liu TY, Shibata Y, Lu H, Rapoport TA, Farese RV Jr, Blackstone C, Guo Y, Mak HY
Modulation of TET2 expression and 5-methylcytosine oxidation by the CXXC domain protein IDAX.
1. Nature - published May 2, 2013
2. Ko M, An J, Bandukwala HS, Chavez L, Aijö T, Pastor WA, Segal MF, Li H, Koh KP, Lähdesmäki H, Hogan PG, Aravind L, Rao A
Structure of active β-arrestin-1 bound to a G-protein-coupled receptor phosphopeptide.
1. Nature - published May 2, 2013
2. Shukla AK, Manglik A, Kruse AC, Xiao K, Reis RI, Tseng WC, Staus DP, Hilger D, Uysal S, Huang LY, Paduch M, Tripathi-Shukla P, Koide A, Koide S, Weis WI, Kossiakoff AA, Kobilka BK, Lefkowitz RJ
Pyridinylquinazolines selectively inhibit human methionine aminopeptidase-1 in cells.
1. J Med Chem - published May 2, 2013
2. Zhang F, Bhat S, Gabelli SB, Chen X, Miller MS, Nacev BA, Cheng YL, Meyers DJ, Tenney K, Shim JS, Crews P, Amzel LM, Ma D, Liu JO
Yeast techniques for modeling drugs targeting Bcl-2 and caspase family members.
1. Cell Death Dis - published May 2, 2013
2. Beaumont TE, Shekhar TM, Kaur L, Pantaki-Eimany D, Kvansakul M, Hawkins CJ
X-ray structure of an AdoMet radical activase reveals an anaerobic solution for formylglycine posttranslational modification.
1. Proc Natl Acad Sci U S A - published May 2, 2013
2. Goldman PJ, Grove TL, Sites LA, McLaughlin MI, Booker SJ, Drennan CL
Cyclic [G(2',5')pA(3',5')p] is the metazoan second messenger produced by DNA-activated cyclic GMP-AMP synthase.
1. Cell - published May 2, 2013
2. Gao P, Ascano M, Wu Y, Barchet W, Gaffney BL, Zillinger T, Serganov AA, Liu Y, Jones RA, Hartmann G, Tuschl T, Patel DJ
Expression of recombinant human complement C1q allows identification of the C1r/C1s-binding sites.
1. Proc Natl Acad Sci U S A - published May 2, 2013
2. Bally I, Ancelet S, Moriscot C, Gonnet F, Mantovani A, Daniel R, Schoehn G, Arlaud GJ, Thielens NM
Heterochromatin protein Sir3 induces contacts between the amino terminus of histone H4 and nucleosomal DNA.
1. Proc Natl Acad Sci U S A - published May 2, 2013
2. Wang F, Li G, Altaf M, Lu C, Currie MA, Johnson A, Moazed D
Bifunctional inhibition of human immunodeficiency virus type 1 reverse transcriptase: mechanism and proof-of-concept as a novel therapeutic design strategy.
1. J Med Chem - published May 2, 2013
2. Bailey CM, Sullivan TJ, Iyidogan P, Tirado-Rives J, Chung R, Ruiz-Caro J, Mohamed E, Jorgensen WL, Hunter R, Anderson KS
Genome encapsidation by orthobunyavirus nucleoproteins.
1. Proc Natl Acad Sci U S A - published May 2, 2013
2. Zheng W, Tao YJ
Chromatin: a tail of repression.
1. Curr Biol - published May 2, 2013
2. Moazed D
Structure of a pore-blocking toxin in complex with a eukaryotic voltage-dependent K(+) channel.
1. Elife - published May 2, 2013
2. Banerjee A, Lee A, Campbell E, Mackinnon R
Structure of the mammalian ribosomal 43S preinitiation complex bound to the scanning factor DHX29.
1. Cell - published May 2, 2013
2. Hashem Y, des Georges A, Dhote V, Langlois R, Liao HY, Grassucci RA, Hellen CU, Pestova TV, Frank J
Pharmacological brake-release of mRNA translation enhances cognitive memory.
1. Elife - published May 2, 2013
2. Sidrauski C, Acosta-Alvear D, Khoutorsky A, Vedantham P, Hearn BR, Li H, Gamache K, Gallagher CM, Ang KK, Wilson C, Okreglak V, Ashkenazi A, Hann B, Nader K, Arkin MR, Renslo AR, Sonenberg N, Walter P
Catalytic mechanisms of complex II enzymes: a structural perspective.
1. Biochim Biophys Acta - published May 1, 2013
2. Iverson TM
Phosphotyrosine signaling proteins that drive oncogenesis tend to be highly interconnected.
1. Mol Cell Proteomics - published May 1, 2013
2. Koytiger G, Kaushansky A, Gordus A, Rush J, Sorger PK, MacBeath G
PilMNOPQ from the Pseudomonas aeruginosa type IV pilus system form a transenvelope protein interaction network that interacts with PilA.
1. J Bacteriol - published May 1, 2013
2. Tammam S, Sampaleanu LM, Koo J, Manoharan K, Daubaras M, Burrows LL, Howell PL
Reversibly acetylated lysine residues play important roles in the enzymatic activity of Escherichia coli N-hydroxyarylamine O-acetyltransferase.
1. FEBS J - published May 1, 2013
2. Zhang QF, Gu J, Gong P, Wang XD, Tu S, Bi LJ, Yu ZN, Zhang ZP, Cui ZQ, Wei HP, Tao SC, Zhang XE, Deng JY
Murine vaginal colonization model for investigating asymptomatic mucosal carriage of Streptococcus pyogenes.
1. Infect Immun - published May 1, 2013
2. Watson ME Jr, Nielsen HV, Hultgren SJ, Caparon MG
Conformation-dependent recognition of HIV gp120 by designed ankyrin repeat proteins provides access to novel HIV entry inhibitors.
1. J Virol - published May 1, 2013
2. Mann A, Friedrich N, Krarup A, Weber J, Stiegeler E, Dreier B, Pugach P, Robbiani M, Riedel T, Moehle K, Robinson JA, Rusert P, Plückthun A, Trkola A
Peptidoglycan transformations during Bacillus subtilis sporulation.
1. Mol Microbiol - published May 1, 2013
2. Tocheva EI, López-Garrido J, Hughes HV, Fredlund J, Kuru E, Vannieuwenhze MS, Brun YV, Pogliano K, Jensen GJ
Discovering naturally processed antigenic determinants that confer protective T cell immunity.
1. J Clin Invest - published May 1, 2013
2. Gilchuk P, Spencer CT, Conant SB, Hill T, Gray JJ, Niu X, Zheng M, Erickson JJ, Boyd KL, McAfee KJ, Oseroff C, Hadrup SR, Bennink JR, Hildebrand W, Edwards KM, Crowe JE Jr, Williams JV, Buus S, Sette A, Schumacher TN, Link AJ, Joyce S
Eukaryotic Argonautes come into focus.
1. Trends Biochem Sci - published May 1, 2013
2. Kuhn CD, Joshua-Tor L
Mycobacterium tuberculosis RNA polymerase-binding protein A (RbpA) and its interactions with sigma factors.
1. J Biol Chem - published May 1, 2013
2. Bortoluzzi A, Muskett FW, Waters LC, Addis PW, Rieck B, Munder T, Schleier S, Forti F, Ghisotti D, Carr MD, O'Hare HM
Structural basis of signal sequence surveillance and selection by the SRP-FtsY complex.
1. Nat Struct Mol Biol - published May 1, 2013
2. von Loeffelholz O, Knoops K, Ariosa A, Zhang X, Karuppasamy M, Huard K, Schoehn G, Berger I, Shan SO, Schaffitzel C
Structure of the Legionella effector AnkX reveals the mechanism of phosphocholine transfer by the FIC domain.
1. EMBO J - published May 1, 2013
2. Campanacci V, Mukherjee S, Roy CR, Cherfils J
Glucosamine and glucosamine-6-phosphate derivatives: catalytic cofactor analogues for the glmS ribozyme.
1. J Org Chem - published May 1, 2013
2. Posakony JJ, Ferré-D'Amaré AR
Architecture and assembly of the Gram-positive cell wall.
1. Mol Microbiol - published May 1, 2013
2. Beeby M, Gumbart JC, Roux B, Jensen GJ
Spiroaminal Model Systems of the Marineosins with Final Step Pyrrole Incorporation.
1. Tetrahedron Lett - published May 1, 2013
2. CW Lindsley, LN Aldrich, BS Bates, CB Berry, LC Konkol, JD Panarese
Illuminating regeneration: noninvasive imaging of disease progression in muscular dystrophy.
1. J Clin Invest - published May 1, 2013
2. Levy JR, Campbell KP
Solvated protein-DNA docking using HADDOCK.
1. J Biomol NMR - published May 1, 2013
2. van Dijk M, Visscher KM, Kastritis PL, Bonvin AM
Active site architecture of a sugar N-oxygenase.
1. Biochemistry - published May 1, 2013
2. Thoden JB, Branch MC, Zimmer AL, Bruender NA, Holden HM
On the usefulness of ion-mobility mass spectrometry and SAXS data in scoring docking decoys.
1. Acta Crystallogr D Biol Crystallogr - published May 1, 2013
2. Karaca E, Bonvin AM
Now on display: a gallery of group II intron structures at different stages of catalysis.
1. Mob DNA - published May 1, 2013
2. Marcia M, Somarowthu S, Pyle AM
Reversible folding of human peripheral myelin protein 22, a tetraspan membrane protein.
1. Biochemistry - published May 1, 2013
2. Schlebach JP, Peng D, Kroncke BM, Mittendorf KF, Narayan M, Carter BD, Sanders CR
Immunology. Crowdsourcing immunity.
1. Science - published May 1, 2013
2. Crowe JE Jr
Delineating antibody recognition in polyclonal sera from patterns of HIV-1 isolate neutralization.
1. Science - published May 1, 2013
2. Georgiev IS, Doria-Rose NA, Zhou T, Kwon YD, Staupe RP, Moquin S, Chuang GY, Louder MK, Schmidt SD, Altae-Tran HR, Bailer RT, McKee K, Nason M, O'Dell S, Ofek G, Pancera M, Srivatsan S, Shapiro L, Connors M, Migueles SA, Morris L, Nishimura Y, Martin MA, Mascola JR, Kwong PD
A quantitative analysis of histone methylation and acetylation isoforms from their deuteroacetylated derivatives: application to a series of knockout mutants.
1. J Mass Spectrom - published May 1, 2013
2. Fiedler KL, Bheda P, Dai J, Boeke JD, Wolberger C, Cotter RJ
A structural role for the PHP domain in E. coli DNA polymerase III.
1. BMC Struct Biol - published May 1, 2013
2. Barros T, Guenther J, Kelch B, Anaya J, Prabhakar A, O'Donnell M, Kuriyan J, Lamers MH
The unfolded protein response element IRE1α senses bacterial proteins invading the ER to activate RIG-I and innate immune signaling.
1. Cell Host Microbe - published May 1, 2013
2. Cho JA, Lee AH, Platzer B, Cross BCS, Gardner BM, De Luca H, Luong P, Harding HP, Glimcher LH, Walter P, Fiebiger E, Ron D, Kagan JC, Lencer WI
Selecting the best type of mobile application for chronic disease self-management.
1. Comput Inform Nurs - published May 1, 2013
2. Wood FG, Robson MP, Thompson MK, Johnson RL
Cocrystal structure of the ICAP1 PTB domain in complex with a KRIT1 peptide.
1. Acta Crystallogr Sect F Struct Biol Cryst Commun - published May 1, 2013
2. Liu W, Boggon TJ
Matrix metalloproteinase-triggered denuding of engineered gold nanoparticles for selective cell uptake.
1. J Mater Chem B - published May 1, 2013
2. Suresh AK, Weng Y, Li Z, Zerda R, Van Haute D, Williams JC, Berlin JM