Member Publications

Jump to specific year:

69 Member Publications for April 2013

Studying protein-reconstituted proteoliposome fusion with content indicators in vitro.
1. Bioessays - published April 29, 2013
2. AT Brunger, M Kyoung, Y Zhang, M Zhao, J Diao
Release of cellular tension signals self-restorative ventral lamellipodia to heal barrier micro-wounds.
1. J Cell Biol - published April 29, 2013
2. CV Carman, TA Springer, T Kirchhausen, AM Dvorak, M Toporsian, T Sciuto, L Varghese, R Massol, PT Sage, M Kamei, R Martinelli
Structural and Functional Analysis of the C-Terminal Domain of Nup358/RanBP2.
1. J Mol Biol - published April 26, 2013
2. S Zimmermann, DH Lin, A Hoelz, E Stuwe, T Stuwe
Structure of RSV Fusion Glycoprotein Trimer Bound to a Prefusion-Specific Neutralizing Antibody.
1. Science - published April 25, 2013
2. BS Graham, PD Kwong, N Xia, M Zhao, Z Zheng, K Modjarrad, A Kumar, T Beaumont, E Yasuda, U Baxa, T Zhou, Y Yang, X Du, KW Graepel, S Leung, M Chen, JS McLellan
MERTK controls melanoma cell migration and survival and differentially regulates cell behavior relative to AXL.
1. Pigment Cell Melanoma Res - published April 25, 2013
2. DF Stern, TJ Boggon, M Bosenberg, A Bacchiocchi, JT Platt, KA Tworkoski
Reconstitution and characterization of eukaryotic N6-threonylcarbamoylation of tRNA using a minimal enzyme system.
1. Nucleic Acids Res - published April 25, 2013
2. F Sicheri, D Durocher, AA Caudy, C Nislow, E Lissina, RK Szilard, F Yuan, N Thevakumaran, G Poda, I Kurinov, D Chiovitti, J Strecker, D Neculai, DY Mao, LC Wan
Crystal structure of the protein from Arabidopsis thaliana gene At5g06450, a putative DnaQ-like exonuclease domain-containing protein with homohexameric assembly.
1. Proteins - published April 24, 2013
2. Jr Phillips GN, BW Han, K Jo, HJ Kim, CA Bingman, DJ Kim, JY Lee, T Yeom, KR Kim, JS Park, MR Han, DW Smith
Crystal Structure of the Complex between Prokaryotic Ubiquitin-like Protein and Its Ligase PafA.
1. J Am Chem Soc - published April 23, 2013
2. E Weber-Ban, N Ban, CL Delley, J Barandun
Dynamic self-stiffening in liquid crystal elastomers.
1. Nat Commun - published April 23, 2013
2. R Verduzco, WG Chapman, PM Ajayan, BJ Carey, PK Patra, Y Shamoo, AC Chipara, A Agrawal
DAF-16 employs the chromatin remodeller SWI/SNF to promote stress resistance and longevity.
1. Nat Cell Biol - published April 21, 2013
2. G Ruvkun, JM Asara, A Dillin, RE Kingston, SE Bowman, JA West, T Heimbucher, NV Kirienko, GF Lourenco, RH Dowen, CG Riedel
Improved Manganese-Oxidizing Activity of DypB, a Peroxidase from a Lignolytic Bacterium.
1. ACS Chem Biol - published April 19, 2013
2. LD Eltis, ME Murphy, JF Kadla, W Qin, JC Grigg, R Singh
Lipid droplet-binding protein TIP47 regulates hepatitis C Virus RNA replication through interaction with the viral NS5A protein.
1. PLoS Pathog - published April 18, 2013
2. Vogt DA, Camus G, Herker E, Webster BR, Tsou CL, Greene WC, Yen TS, Ott M
Structural basis of protein phosphatase 2A stable latency.
1. Nat Commun - published April 18, 2013
2. Jiang L, Stanevich V, Satyshur KA, Kong M, Watkins GR, Wadzinski BE, Sengupta R, Xing Y
Metamorphic protein IscU alternates conformations in the course of its role as the scaffold protein for iron-sulfur cluster biosynthesis and delivery.
1. FEBS Lett - published April 17, 2013
2. M Tonelli, RO Frederick, K Cai, JR Bothe, Z Dai, JH Kim, JL Markley
Engineering and characterization of the chimeric antibody that targets the C-terminal telopeptide of the α2 chain of human collagen I: a next step in the quest to reduce localized fibrosis.
1. Connect Tissue Res - published April 17, 2013
2. Fertala J, Steplewski A, Kostas J, Beredjiklian P, Williams G, Arnold W, Abboud J, Bhardwaj A, Hou C, Fertala A
Structures of the Noncanonical RNA Ligase RtcB Reveal the Mechanism of Histidine Guanylylation.
1. Biochemistry - published April 16, 2013
2. RT Raines, Jr Phillips GN, CA Bingman, KK Desai
Thiol Modification By Pharmacologically Active Agents of the Diazeniumdiolate Class.
1. For Immunopathol Dis Therap - published April 16, 2013
2. Maciag AE, Holland RJ, Saavedra JE, Chakrapani H, Shami PJ, Keefer LK
Structural basis for angiopoietin-1-mediated signaling initiation.
1. Proc Natl Acad Sci U S A - published April 16, 2013
2. WA Barton, DB Nikolov, KR Rajashankar, Y Goldgur, D Tzvetkova-Robev, AC Dalton, TC Seegar, X Yu
Tertiary model of a plant cellulose synthase.
1. Proc Natl Acad Sci U S A - published April 16, 2013
2. YG Yingling, S Debolt, D Bonetta, J Zimmer, JD Kubicki, CH Haigler, L Sethaphong
Activation of UbcH5c∼Ub Is the Result of a Shift in Interdomain Motions of the Conjugate Bound to U-Box E3 Ligase E4B.
1. Biochemistry - published April 15, 2013
2. WJ Chazin, RE Klevit, SE Soss
Crystal structure of KLHL3 in complex with Cullin3.
1. PLoS One - published April 11, 2013
2. Ji AX, Privé GG
Molecular Imaging of Cyclooxygenase-2 in Canine Transitional Cell Carcinomas In Vitro and In Vivo.
1. Cancer Prev Res (Phila) - published April 10, 2013
2. LJ Marnett, A Carter, L Wright, K Rathore, AM Legendre, A Callens, JW Bartges, MJ Uddin, M Cekanova
New method for purifying histidine-rich glycoprotein from human plasma redefines its functional properties.
1. IUBMB Life - published April 10, 2013
2. MD Hulett, NJ Hoogenraad, TJ Ralph, NL Taylor, MA Perugini, GH Talbo, IK Poon, KK Patel
Structural basis for HIV-1 gp120 recognition by a germ-line version of a broadly neutralizing antibody.
1. Proc Natl Acad Sci U S A - published April 9, 2013
2. R Diskin, PJ Bjorkman, MC Nussenzweig, JF Scheid, T Lee, H Gao, Jr West AP, L Scharf
New players to the field of ADP-ribosylation make the final cut.
1. EMBO J - published April 9, 2013
2. JM Pascal, JD Steffen
Crystal structure of glycoprotein E2 from bovine viral diarrhea virus.
1. Proc Natl Acad Sci U S A - published April 8, 2013
2. Y Modis, R Kanai, J Wang, Y Li
The platform protein is essential for type IV pilus biogenesis.
1. J Biol Chem - published April 5, 2013
2. Takhar HK, Kemp K, Kim M, Howell PL, Burrows LL
Diacylglycerol acyltransferase-1 localizes hepatitis C virus NS5A protein to lipid droplets and enhances NS5A interaction with the viral capsid core.
1. J Biol Chem - published April 5, 2013
2. Camus G, Herker E, Modi AA, Haas JT, Ramage HR, Farese RV Jr, Ott M
A readily applicable strategy to convert peptides to peptoid-based therapeutics.
1. PLoS One - published April 5, 2013
2. Park M, Wetzler M, Jardetzky TS, Barron AE
Structural Organization of FtsB, a Transmembrane Protein of the Bacterial Divisome.
1. Biochemistry - published April 4, 2013
2. A Senes, I Rayment, A Khadria, S Subramaniam, KC Taylor, LM Lapointe
SIRT6 regulates TNF-α secretion through hydrolysis of long-chain fatty acyl lysine.
1. Nature - published April 4, 2013
2. Jiang H, Khan S, Wang Y, Charron G, He B, Sebastian C, Du J, Kim R, Ge E, Mostoslavsky R, Hang HC, Hao Q, Lin H
Functional mapping of PilF and PilQ in the Pseudomonas aeruginosa type IV pilus system.
1. Biochemistry - published April 3, 2013
2. Koo J, Tang T, Harvey H, Tammam S, Sampaleanu L, Burrows LL, Howell PL
Conformational fluctuations of UreG, an intrinsically disordered enzyme.
1. Biochemistry - published April 3, 2013
2. Musiani F, Ippoliti E, Micheletti C, Carloni P, Ciurli S
Structural basis for encapsidation of genomic RNA by La Crosse Orthobunyavirus nucleoprotein.
1. Proc Natl Acad Sci U S A - published April 3, 2013
2. Reguera J, Malet H, Weber F, Cusack S
X-ray snapshots of possible intermediates in the time course of synthesis and degradation of protein-bound Fe4S4 clusters.
1. Proc Natl Acad Sci U S A - published April 3, 2013
2. Nicolet Y, Rohac R, Martin L, Fontecilla-Camps JC
Native α-synuclein induces clustering of synaptic-vesicle mimics via binding to phospholipids and synaptobrevin-2/VAMP2.
1. Elife - published April 3, 2013
2. Diao J, Burré J, Vivona S, Cipriano DJ, Sharma M, Kyoung M, Südhof TC, Brunger AT
Structural and functional studies of the 252 kDa nucleoporin ELYS reveal distinct roles for its three tethered domains.
1. Structure - published April 2, 2013
2. Bilokapic S, Schwartz TU
Correction to effect of cofactor binding and loop conformation on side chain methyl dynamics in dihydrofolate reductase.
1. Biochemistry - published April 2, 2013
2. PE Wright, HJ Dyson, JR Schnell
Crystal structure of a eukaryotic phosphate transporter.
1. Nature - published April 2, 2013
2. Pedersen BP, Kumar H, Waight AB, Risenmay AJ, Roe-Zurz Z, Chau BH, Schlessinger A, Bonomi M, Harries W, Sali A, Johri AK, Stroud RM
Mechanism of Ferrous Iron Binding and Oxidation by Ferritin from a Pennate Diatom.
1. J Biol Chem - published April 2, 2013
2. ME Murphy, NE Le Brun, R Abdulqadir, S Pfaffen
Mutations in K-Ras linked to levels of osteoprotegerin and sensitivity to TRAIL-induced cell death in pancreatic ductal adenocarcinoma cells.
1. Exp Mol Pathol - published April 1, 2013
2. Kanzaki H, Ohtaki A, Merchant FK, Greene MI, Murali R
Selective serotonin reuptake inhibitor fluoxetine inhibits replication of human enteroviruses B and D by targeting viral protein 2C.
1. Antimicrob Agents Chemother - published April 1, 2013
2. Ulferts R, van der Linden L, Thibaut HJ, Lanke KH, Leyssen P, Coutard B, De Palma AM, Canard B, Neyts J, van Kuppeveld FJ
Toward a "structural BLAST": using structural relationships to infer function.
1. Protein Sci - published April 1, 2013
2. Dey F, Cliff Zhang Q, Petrey D, Honig B
Brucella immunogenic BP26 forms a channel-like structure.
1. J Mol Biol - published April 1, 2013
2. Kim D, Park J, Kim SJ, Soh YM, Kim HM, Oh BH, Song JJ
Targeting uPAR with antagonistic recombinant human antibodies in aggressive breast cancer.
1. Cancer Res - published April 1, 2013
2. LeBeau AM, Duriseti S, Murphy ST, Pepin F, Hann B, Gray JW, VanBrocklin HF, Craik CS
Translational repression of thymidylate synthase by targeting its mRNA.
1. Nucleic Acids Res - published April 1, 2013
2. Garg D, Beribisky AV, Ponterini G, Ligabue A, Marverti G, Martello A, Costi MP, Sattler M, Wade RC
Similar uptake but different trafficking and escape routes of reovirus virions and infectious subvirion particles imaged in polarized Madin-Darby canine kidney cells.
1. Mol Biol Cell - published April 1, 2013
2. Boulant S, Stanifer M, Kural C, Cureton DK, Massol R, Nibert ML, Kirchhausen T
Characterization of Torin2, an ATP-competitive inhibitor of mTOR, ATM, and ATR.
1. Cancer Res - published April 1, 2013
2. Liu Q, Xu C, Kirubakaran S, Zhang X, Hur W, Liu Y, Kwiatkowski NP, Wang J, Westover KD, Gao P, Ercan D, Niepel M, Thoreen CC, Kang SA, Patricelli MP, Wang Y, Tupper T, Altabef A, Kawamura H, Held KD, Chou DM, Elledge SJ, Janne PA, Wong KK, Sabatini DM, Gray NS
Linker histone H1.0 interacts with an extensive network of proteins found in the nucleolus.
1. Nucleic Acids Res - published April 1, 2013
2. Kalashnikova AA, Winkler DD, McBryant SJ, Henderson RK, Herman JA, DeLuca JG, Luger K, Prenni JE, Hansen JC
Mutational tail loss is an evolutionary mechanism for liberating marapsins and other type I serine proteases from transmembrane anchors.
1. J Biol Chem - published April 1, 2013
2. Raman K, Trivedi NN, Raymond WW, Ganesan R, Kirchhofer D, Verghese GM, Craik CS, Schneider EL, Nimishakavi S, Caughey GH
Reversion of somatic mutations of the respiratory syncytial virus-specific human monoclonal antibody Fab19 reveal a direct relationship between association rate and neutralizing potency.
1. J Immunol - published April 1, 2013
2. Bates JT, Keefer CJ, Utley TJ, Correia BE, Schief WR, Crowe JE Jr
Detergent-mediated protein aggregation.
1. Chem Phys Lipids - published April 1, 2013
2. Neale C, Ghanei H, Holyoake J, Bishop RE, Privé GG, Pomès R
Autoactivation of thrombin precursors.
1. J Biol Chem - published April 1, 2013
2. Pozzi N, Chen Z, Zapata F, Niu W, Barranco-Medina S, Pelc LA, Di Cera E
Macrodomain-containing proteins are new mono-ADP-ribosylhydrolases.
1. Nat Struct Mol Biol - published April 1, 2013
2. Rosenthal F, Feijs KL, Frugier E, Bonalli M, Forst AH, Imhof R, Winkler HC, Fischer D, Caflisch A, Hassa PO, Lüscher B, Hottiger MO
Functional characterization of a ClC transporter by solid-supported membrane electrophysiology.
1. J Gen Physiol - published April 1, 2013
2. Garcia-Celma J, Szydelko A, Dutzler R
A conformational switch in HP1 releases auto-inhibition to drive heterochromatin assembly.
1. Nature - published April 1, 2013
2. Canzio D, Liao M, Naber N, Pate E, Larson A, Wu S, Marina DB, Garcia JF, Madhani HD, Cooke R, Schuck P, Cheng Y, Narlikar GJ
The proteasome under the microscope: the regulatory particle in focus.
1. Curr Opin Struct Biol - published April 1, 2013
2. Lander GC, Martin A, Nogales E
Structure and assembly of the influenza A virus ribonucleoprotein complex.
1. FEBS Lett - published April 1, 2013
2. Zheng W, Tao YJ
Enhanced Sampling and Overfitting Analyses in Structural Refinement of Nucleic Acids into Electron Microscopy Maps.
1. J Phys Chem B - published April 1, 2013
2. 3rd Brooks CL, G Skiniotis, H Vashisth
Oral disinfectants inhibit protein-protein interactions mediated by the anti-apoptotic protein Bcl-xL and induce apoptosis in human oral tumor cells.
1. Angew Chem Int Ed Engl - published April 1, 2013
2. Gräber M, Hell M, Gröst C, Friberg A, Sperl B, Sattler M, Berg T
Activation of different split functionalities on re-association of RNA-DNA hybrids.
1. Nat Nanotechnol - published April 1, 2013
2. Afonin KA, Viard M, Martins AN, Lockett SJ, Maciag AE, Freed EO, Heldman E, Jaeger L, Blumenthal R, Shapiro BA
Bacterial biofilms: development, dispersal, and therapeutic strategies in the dawn of the postantibiotic era.
1. Cold Spring Harb Perspect Med - published April 1, 2013
2. Kostakioti M, Hadjifrangiskou M, Hultgren SJ
Identification of a dimerization domain in the TMEM16A calcium-activated chloride channel (CaCC).
1. Proc Natl Acad Sci U S A - published April 1, 2013
2. Tien J, Lee HY, Minor DL Jr, Jan YN, Jan LY
Improved native isolation of endogenous Protein A-tagged protein complexes.
1. Biotechniques - published April 1, 2013
2. LaCava J, Chandramouli N, Jiang H, Rout MP
Judge, jury, and executioner: DXO functions as a decapping enzyme and exoribonuclease in pre-mRNA quality control.
1. Mol Cell - published April 1, 2013
2. Mugridge JS, Gross JD
Structural insights into LINC complexes.
1. Curr Opin Struct Biol - published April 1, 2013
2. Sosa BA, Kutay U, Schwartz TU
Structure-function studies of STAR family Quaking proteins bound to their in vivo RNA target sites.
1. Genes Dev - published April 1, 2013
2. Teplova M, Hafner M, Teplov D, Essig K, Tuschl T, Patel DJ
Structural studies on the regulation of Ca2+/calmodulin dependent protein kinase II.
1. Curr Opin Struct Biol - published April 1, 2013
2. Stratton MM, Chao LH, Schulman H, Kuriyan J
Human germline antibody gene segments encode polyspecific antibodies.
1. PLoS Comput Biol - published April 1, 2013
2. Willis JR, Briney BS, DeLuca SL, Crowe JE Jr, Meiler J