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an analysis program for chemical exchange detected by NMR.

is a Siamese neural network designed to predict stability changes from protein double point mutations. The tool extends ThermoMPNN and ProteinMPNN, offering three prediction modes: single mutant, additive double mutant (which sums individual contributions), and epistatic double mutant (which captures epistatic interactions between mutations). It provides fast inference through batched predictions and includes tools for systematic analysis of all possible single or double mutants in a protein structure, outputting mutation and ΔΔG values.

is a graph neural network (GNN) designed to predict changes in stability for protein point mutants using transfer learning. This tool is particularly useful for researchers in structural biology and bioinformatics, providing insights into protein stability alterations due to mutations. It supports customizable output locations for inference, enhancing usability in various computational environments.

an open-source, community-driven analysis and visualization platform for ‘omics data. Its interactive interface facilitates the management of metagenomic contigs and associated data for automatic or human-guided identification of genome bins and their curation.

a collection of cheminformatics and machine-learning software written in C++ and Python.

a tool that utilizes deep learning to perform volumetric electron microscopy image segmentations, both semantic and instance segmentation.

a collection of cheminformatics and machine-learning software written in C++ and Python.

a deep-learning software package for simultaneous missing wedge correction, denoising, and CTF correction in cryo-electron tomography reconstructions using a deep neural network trained on information from the original tomogram(s).

(X-ray Detector Software) a software tool for processing single-crystal monochromatic diffraction data recorded by the rotation method.

is a desktop application that provides WYSIWYG mask generation for cryo-electron microscopy data analysis. It offers an intuitive graphical interface with real-time visual feedback, eliminating the need for complex command-line operations and iterative scripting cycles. The tool integrates with standard cryoEM file formats, and includes advanced masking capabilities for complex structures and membrane proteins.