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is a controllable foundation model for general and specialized biomolecular structure prediction that supports proteins, nucleic acids, and their complexes.

a suite of tools for drug discovery.

is a comprehensive all-atom benchmark for biomolecular structure prediction that spans proteins, nucleic acids, ligands, and six major interaction types. The benchmark includes 1,505 low-homology targets covering protein-protein, antibody-antigen, protein-ligand, protein-peptide, protein-RNA, and protein-DNA interfaces, plus monomeric structures for proteins, RNA, and DNA. It provides standardized evaluation metrics and a leaderboard comparing major structure prediction models including AlphaFold 3, Boltz-1, Chai-1, HelixFold 3, and Protenix across different molecular interaction types.

a successor to the original LIGPLOT program for automatic generation of 2D ligand-protein interaction diagrams. It is run from an intuitive java interface which allows on-screen editing of the plots via mouse click-and-drag operations.

a high performance toolkit for molecular simulation that can be used either as a stand-alone application for running simulations or as a library you call from your own code.

a program for ab initio phase determination.

AITom is an open-source platform for AI driven cellular electron cryo-tomography analysis. AITom is originated from the tomominer library, adapted from an extended version of the tomominer library, developed at Alber Lab.

(Diffraction Integration for Advanced Light Sources) a software project for the analysis of crystallographic diffraction images for many new methods from shutterless, fine-sliced rotation scans to randomly-oriented snapshots of serial crystallography. It uses multiple CPU and GPU machines to increase speed and accuracy based on a comprehensive physical model.

a Python package and simple command-line program to automatically fit high-resolution atomic structures in cryo-EM densities.

a set of image processing, modeling and display programs used for tomographic reconstruction and for 3D reconstruction of EM serial sections and optical sections.