News

Scientific Web Developer Position

Updated: March 27, 2014

The SBGrid Consortium operating at Harvard Medical School in Boston has an immediate opening for an enthusiastic scientific web developer. The role involves developing, updating and maintaining high-throughput structural biology work-flows in an …

EMAN 1.60 installed.

Updated: March 27, 2014

We have just added a new version of EMAN for Linux. Please check http://ncmi.bcm.tmc.edu/~stevel/EMAN/doc/ for 1.6 release notes. According to release notes there still seem to be some problems running under RH9 with …

Eleventh Annual Harvard Structural Biology Retreat

Updated: March 27, 2014

Friday, July 29 2005 at the American Academy of Arts and Sciences Norton's Woods, 136 Irving Street, Cambridge, MA The Fee is $60. Register online by July 21st. Click here to register

Seminar: Wed, July 25th

Updated: March 27, 2014

SBGrid will host a special seminar on Wednesday, July 25th at 11:30 am, presented by Yuichiro Takagi, Associate Professor in the Department of Biochemistry and Molecular Biology at Indiana University School of Medicine. …

PyMOL Minicourse, March 7th

Updated: March 27, 2014

Thursday, March 7th SBGrid Minicourse: PyMOL Presented by PyMOL developers Thomas Holder and Jason Vertrees Schrödinger, LLC Host: SBGrid Consortium, Harvard Medical School Registration for each session will be limited to 25 participants. …

Desmond Software Workshop

Updated: March 27, 2014

Wednesday, October 5, Dr. Istvan Kolossvary from D.E. Shaw Research will discuss Desmond 3.0 in an all-day hands-on tutorial. Registration required ($55/per person including lunch). Registration spaces are very limited and will be …

SGI freeware packages

Updated: March 27, 2014

SBGird now supports the SGI IRIX 6.5.26m operating system. You can install OS patches directly with the SBGird software depository: /programs/iris4d/extras/IRIX6.5.26. Please note that some older IRIX computers (Indygo2 and below) can be …

December Software Updates

Updated: March 27, 2014

Software updates will be sent to your laboratory on the night of Friday, December 22, 2006. The following software will be available after this weekend's updates: Electron microscopy users will now have access …

PYMOL has been upgraded to 0.95

Updated: March 27, 2014

This is upgrade for Linux platform only.

December Computing Grid Update

Updated: March 27, 2014

Our 144 CPU computational grid is available to the SBgrid community through the General User Program at no extra charge (www.sbgrid.org/gup). This month's awardees include a user from Gerhard Wagner lab at HMS. …

Shelx, Chimera plus Mac OSX Updates

Updated: March 27, 2014

Shelx 97-2 has been updated to include additional programs. Chimera has been updated to 1.2065. Special versions of ccp4 apps and RAVE utls have been added to: /programs/i386-linux/gerard/proto/AMD64 /programs/i386-linux/ccp4/proto/AMD64 Additional Mac OSX programs: …

Software Hints

Updated: March 27, 2014

Some of the software we provide can be tricky to use. That’s why we’re here – to help simplify ease-of-use of this software. In the Software Hints section of our newsletters, we’ll provide …

Software Update for December

Updated: March 27, 2014

This month we have new versions of Coot, PHENIX, CCPNMR, NMR relax, and BLAST in this update, as well as a few new packages including BioPython, PROFphd and SAM.

Software Update for February

Updated: March 27, 2014

There was a very small unannounced update in January to provide new XDS binaries, which expired over the Christmas holidays and a new version of CCP4mg, which purported to fix the issue with …

Software Update for November

Updated: March 27, 2014

It has been a solid month since our last update, and we have quite a few new and updated packages including updates to Coot, PHENIX nightly, Jalview, GROMACS, EMAN2 and em2em. The new …

Software Update for October

Updated: March 27, 2014

We have a large update for this month including PHENIX, Coot, CCP4mg, Chimera, several software packages from the Grigorieff Lab, LABELIT, RNAVIEW, Rosetta and a couple of PyMOL plugins. Due to the large …

Software Updates (Sept 2006)

Updated: March 27, 2014

The new software will be available on your computers on Saturday, September 9th.The following applications will be updated in the process:CCP4 to version 6.0.1 – CCP4 version 6.0 is the most recent major …

Software Upgrades

Updated: March 27, 2014

SITUS – version 2.2.1 (Linux) - program package for the modeling of atomic resolution structures into low-resolution density maps e.g. from electron microscopy, tomography, or small angle X-ray scattering. Version 2.2.1 provides many …

PyMOL 1.4 Webinar, Sept 27

Updated: March 27, 2014

Tuesday, Sept 27 at 1:00pm. Jason Vertrees, the lead PyMOL developer at Schrodinger, will present a webinar on "Hints, Tips and New Features for PyMOL v1.4". Register here to join us for this …

New Software Updates

Updated: March 27, 2014

The following software will be available after this weekend's updates: CNS 1.2 will be available exclusively to SBGrid members. New improvements include - updated bulk solvent model and scale factor calculations (developed for …