Installing SBGrid Software
Using the SBGrid Environment
Support for Site Administrators
Hardware Support Notes
Getting Help
Support for Developers
Looking forward to seeing you at PHENIX 2016.
We will be using PHENIX during the workshop but you may also want to install PyMOL, CCP4 (includes COOT), and any other tools you prefer to use. https://sbgrid.org/wiki/client_install
We have assembled a set of reference data for discussion during workshop.
You can download the data as a tarball here : Workshop2016Datasets.tar.bz2 - 37.5Mb
or
Workshop2016Datasets.zip - 37.5Mb
See Archive directory structure below.
Images are not necessary but can be downloaded from the SBDB with:
rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/<dataset number> .
Each dataset includes a readme.txt file with a description.
Dataset #3 : X-Ray Diffraction data from Lin28/let-7d microRNA complex, source of 3TRZ structure, Zn-SAD dataset
Dataset #97 : X-Ray Diffraction data from Thermoanaerobacter tengcongensis SONO (H-NOX) in complex with dioxygen, source of 1XBN structure, MAD dataset collected at the iron edge
Dataset #111 : X-Ray Diffraction data from 'Spinach' RNA-chromophore complex, source of 4TS0 structure
Dataset #123 : X-Ray Diffraction data from HSV-2 gH/gL complex, source of 3M1C structure, A selenomethionine single-wavelength anomalous diffraction dataset
├── 111
│ ├── 4TSO.fasta
│ ├── kd
│ │ ├── CORRECT.LP
│ │ ├── XDS_ASCII.HKL
│ │ └── XDS.INP
│ ├── readme.txt
│ └── sbdb
│ ├── proc-0.mtz
│ ├── proc-1.mtz
│ ├── proc-2.mtz
│ └── proc-3.mtz
├── 123
│ ├── 3M1C.fasta
│ ├── kd
│ │ ├── CORRECT.LP
│ │ ├── XDS_ASCII.HKL
│ │ └── XDS.INP
│ ├── readme.txt
│ └── sbdb
│ ├── proc-0.mtz
│ ├── proc-1.mtz
│ ├── proc-2.mtz
│ └── proc-3.mtz
├── 3
│ ├── 3TRZ.fasta
│ ├── kd
│ │ ├── CORRECT.LP
│ │ ├── XDS_ASCII.HKL
│ │ └── XDS.INP
│ ├── readme.txt
│ └── sbdb
│ ├── proc-1.mtz
│ ├── proc-2.mtz
│ └── proc-3.mtz
└── 97
├── 1XBN.fasta
├── readme.txt
└── sbdb
├── proc-1.mtz
└── proc-2.mtz
This version of the page was edited by Jason Key at 2016-11-10 14:10:52. View the most recent version.