sbgrid-phenix2016-data

SBGrid PHENIX 2016

Looking forward to seeing you at PHENIX 2016.

We will be using PHENIX during the workshop. You may also want to install CCP4 to provide COOT and any other tools you prefer to use. https://sbgrid.org/wiki/client_install

Reference Datasets

We have assembled a set of reference data for discussion during workshop. You can download that data here :

[[Workshop2016Datasets.tar.bz2 - 37.5Mb]|downloads/Workshop2016Datasets.tar.bz2]

Each dataset includes a readme.txt file with a description.

Directory names

• kd : processing results from Kay Diederichs
• sbdb : automated data reduction results
• PDB CODE.fasta : sequence file from RCSB

Images can be downloaded from the SBDB with:

rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/<dataset number>  .

Archive directory structure

├── 111
│   ├── 4TSO.fasta
│   ├── kd
│   │   ├── CORRECT.LP
│   │   ├── XDS_ASCII.HKL
│   │   └── XDS.INP
│   ├── readme.txt
│   └── sbdb
│       ├── proc-0.mtz
│       ├── proc-1.mtz
│       ├── proc-2.mtz
│       └── proc-3.mtz
├── 123
│   ├── 3M1C.fasta
│   ├── kd
│   │   ├── CORRECT.LP
│   │   ├── XDS_ASCII.HKL
│   │   └── XDS.INP
│   ├── readme.txt
│   └── sbdb
│       ├── proc-0.mtz
│       ├── proc-1.mtz
│       ├── proc-2.mtz
│       └── proc-3.mtz
├── 3
│   ├── 3TRZ.fasta
│   ├── kd
│   │   ├── CORRECT.LP
│   │   ├── XDS_ASCII.HKL
│   │   └── XDS.INP
│   ├── readme.txt
│   └── sbdb
│       ├── proc-1.mtz
│       ├── proc-2.mtz
│       └── proc-3.mtz
└── 97
    ├── 1XBN.fasta
    ├── readme.txt
    └── sbdb
        ├── proc-1.mtz
        └── proc-2.mtz