Installing SBGrid Software
Using the SBGrid Environment
Support for Site Administrators
Hardware Support Notes
Getting Help
Support for Developers
Modulefiles for loading and unloading SBGrid applications are available in /programs/share/modulefiles/x86_64-linux and /programs/share/modulefiles/i386-mac. The module files are Lua format and should work with an existing LMOD installation using recent versions of LMOD. We do not include LMOD in the SBGrid collection.
It is also possible to use modules to load the full sbgrid environment instead of the "source" command. If you are using modules then you should remove the source lines, such as "source sbgrid.shrc", from your startup rc files.
To access the files you need to update your MODULEPATH environment variable.
in bash
export MODULEPATH=/programs/share/modulefiles/x86_64-linux:"$MODULEPATH"
in tcsh
setenv MODULEPATH /programs/share/modulefiles/x86_64-linux:"$MODULEPATH"
The above command may be added to your shell startup files or your site Administrator may update the system wide path.
$ export MODULEPATH=/programs/share/modulefiles/x86_64-linux/sbgrid #:"$MODULEPATH"
$ ml avail
---------------------- /programs/share/modulefiles/x86_64-linux/sbgrid -----------------------
2dx/3.3.0 fasta/36.3.8d profphd/1.0.38
2dx/3.4.2 (D) fasta/36.3.8g promals/20120412
3dfsc/3.0 fasta/36.3.8h propka/3.4.0
3dna/2.3 fasta/36.3.8i (D) prospect/1.0
3dna/2.3-20160402 fastmodelfree/20060221 proteinmpnn/20220819
3dna/2.3-20170208 fdt/0.24.0 proteus/3.0
3dna/2.3.1-20170624 fdt/0.25.1 protomo/1.1.4
3dna/2.4 fdt/0.26.3 (D) protomo/2.0.9
3dna/2.4.4 (D) ffmpeg/3.2.4 protomo/2.2.0
...$ export MODULEPATH=/programs/share/modulefiles/x86_64-linux:"$MODULEPATH"
$ ml load sbgrid/rc
Loading SBGrid
********************************************************************************
Software Support by SBGrid (www.sbgrid.org)
********************************************************************************
SBGrid was developed with support from its members, Harvard Medical School,
HHMI, and NSF. If use of SBGrid compiled software was an important element
in your publication, please include the following reference in your work:
Software used in the project was installed and configured by SBGrid.
cite: eLife 2013;2:e01456, Collaboration gets the most out of software.
********************************************************************************
SBGrid installation last updated: 2024-05-03
Please submit bug reports and help requests to: <bugs@sbgrid.org> or
<https://sbgrid.org/bugs>
For additional information visit https://sbgrid.org/wiki
********************************************************************************
or
$ ml load sbgrid/shrc
Loading SBGrid
********************************************************************************
Software Support by SBGrid (www.sbgrid.org)
********************************************************************************
SBGrid was developed with support from its members, Harvard Medical School,
HHMI, and NSF. If use of SBGrid compiled software was an important element
in your publication, please include the following reference in your work:
Software used in the project was installed and configured by SBGrid.
cite: eLife 2013;2:e01456, Collaboration gets the most out of software.
********************************************************************************
SBGrid installation last updated: 2024-05-03
Please submit bug reports and help requests to: <bugs@sbgrid.org> or
<https://sbgrid.org/bugs>
For additional information visit https://sbgrid.org/wiki
********************************************************************************
You can remove the sbgrid/biogrids environment with the module unload command. This removes any grid specific environment settings. If after loading sbgrid you load additonal modules, these modules will not be removed. To see what modules you have loaded you can use module list.
$ module unload sbgrid
UnLoading SBGrid
Please report any issues to bugs@sbgrid.org