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examples.md
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| 3 | 3 | The following pages provide usage info and examples for select applications in the SBGrid environment. For access to documentation, manuals, application websites, etc, please visit : [https://sbgrid.org/software](https://sbgrid.org/software/) |
| 4 | 4 | |
| 5 | +- [ALPHAFOLD2](examples/alphafold2) |
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| 5 | 6 | - [Arp/Warp registration](examples/arpwarp_registration) |
| 7 | +- [CARELESS](examples/careless) |
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| 8 | +- [DiffDock](examples/diffdock) |
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| 6 | 9 | - [EMAN2 with Theano for Neural Network Particle Picking](examples/EMAN2_w_theano) |
| 10 | +- [EMBuild](examples/embuild) |
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| 7 | 11 | - [HADDOCK](examples/haddock) |
| 8 | 12 | - [Local Reconstruction in SCIPION](examples/localrec_w_scipion) |
| 9 | 13 | - [Locscale](examples/locscale) |
| 10 | 14 | - [PHENIX - phenix.rosetta_refine](examples/phenix.rosetta_refine) |
| 11 | 15 | - [SCIPION - running tutorials without write privileges](examples/running_scipion_tutorials) |
| 12 | 16 | - [DIALS - Version control in DIALS](examples/DIALS_version_control) |
| 13 | -- [ALPHAFOLD2](examples/alphafold2) |
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| 14 | -- [CARELESS](examples/careless) |
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| 15 | -- [EMBuild](examples/embuild) |
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