df8838a766980ae204903db409d19435d3f0cf85
examples/embuild.md
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1 | + |
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2 | +## EMBuild 1.0 example |
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3 | + |
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4 | +http://huanglab.phys.hust.edu.cn/EMBuild/ |
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5 | + |
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6 | + |
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7 | + |
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8 | +**STRIDE must be installed by user** |
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9 | + |
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10 | +The STRIDE program needed by EMBuild cannot be distributed with SBGrid. Users must download this themselves. An example is provided in the script below. |
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11 | + |
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12 | + |
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13 | +``` |
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1 | 14 | #!/usr/bin/env bash |
2 | 15 | |
3 | 16 | ## SBGrid EMBuild example - EMD-0346 |
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72 | 85 | rearrangepdb 6N52_EMBuild.pdb 6N52_EMBuild_rearranged.pdb |
73 | 86 | |
74 | 87 | EMBuild 0346_MC.mrc 6N52_EMBuild_rearranged.pdb 4.0 6N52_EMBuild_scored.pdb \ |
75 | - --score -stride ${stride_path} |
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0 | + --score -stride ${stride_path} |
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1 | + |
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2 | +``` |
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