usage/_Sidebar.md
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![SBGrid](images/sbgrid_small_logo.gif) **[SBGrid Wiki](Home)**
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-Support for Users
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-* [Getting Started with SBGrid](getting_started)
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-* [Software Help and Requests](help)
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+Installing Software
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+* [Installation: Overview](installation_overview)
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* [Supported Operating Systems](operatingsystems)
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+* [Installation: 'Site' installation](installation_admin)
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+* [Installation: MacOS GUI](client_install)
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+* [Installation: Package Manager](client_CLI_install)
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+
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+Using the SBGrid Environment
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+* [Getting Started with SBGrid](getting_started)
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* [Overriding Software Versions](versions)
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-* [Install SBGrid: MacOS GUI](client_install)
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-* [Install SBGrid: Command line tools](client_CLI_install)
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-* [SBGrid SHARP server](sharp)
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+* [SBGrid environment: Capsules](capsules)
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+* [SBGrid environment: Legacy](monolithic)
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+* [SBGrid MacOS GUI : Usage](client_usage)
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+* [SBGrid Package Manager : Usage](client_CLI_usage)
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+
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+Getting Help
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+* [Software Help and Requests](help)
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Support for Site Administrators
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-* [Software Installation](installation_admin)
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* [Preparing Workstations to run the Software](workstation_setup)
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* [Managing your Installation](managing_install)
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* [Administrator Software Version Overrides](admin_overrides)
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Hardware Support Notes
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* [SBGrid Recommended Hardware](recommended)
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+* [GPU computing](gpu)
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* [Setup Stereo 3D](stereo)
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-WSMR
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+Portals
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* [Data Processing After WSMR](wsmr-worked)
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+* [SBGrid SHARP server](sharp)
usage/admin_overrides.md
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## Site Administrator Overrides
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+SBGrid installations allow site-level software control for Administrators
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### Software Blacklist
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Site administrators can prevent the shell initialization files from configuring software on a host by creating an empty file at
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usage/getting_started.md
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For Bash, in **~/.bashrc**, add :
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if [ -f /programs/sbgrid.shrc ] ; then
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- source /programs/sbgrid.cshrc
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+ source /programs/sbgrid.shrc
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fi
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For tcsh, in **~/.tcshrc** or **~/.cshrc**, add :
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- if ( -e /programs/sbgrid.cshrc) then
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+ if ( -e /programs/sbgrid.cshrc ) then
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source /programs/sbgrid.cshrc
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endif
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usage/images/terminal.png
usage/installation_admin.md
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##Managing Your Software Installation
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### *sbgrid-admin* Utility
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-The *sbgrid-admin* utility used to install the software has a few other uses. There is a download link in the initial site set up email, and it is included in the installation itself at */programs/share/sbgrid/bin/sbgrid-admin*. It includes built-in help:
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+The *sbgrid-admin* utility used to install the complete software collection. A download link is provided in the initial site set up email, and the script is included in the installation itself at */programs/share/sbgrid/bin/sbgrid-admin*. It includes built-in help:
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```
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$ sbgrid-admin -h
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| SB_SITENAME | sbgrid-bene | The site name for your installation provided by SBGrid |
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| SB_SITEKEY | xyxyxyxyxyxyxy | The installation key for your site provided by SBGrid |
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| INSTALL_TARGET| /nfs/programs | The installation directory for the software |
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-| RSYNC_ARGS | "%%--%%port 8080"| Advanced arguments to rsync. Can be used to workaround blocked rsync ports. |
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+| RSYNC_ARGS | "--port 8080"| Advanced arguments to rsync. Can be used to workaround blocked rsync ports. |
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| HTTP_PROXY | host.name:port | Proxy hostname and port for use by rsync and curl |
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| POST_UPDATE_SCRIPT | /absolute/path/to/script|Optional script to be run after a successful software update |
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| CRON_SCHEDULE | 5 1 * * * | Set a custom cron schedule |
usage/managing_install.md
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| Installation Requirements | |
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| ------------------------- | ----------------------------------------------------|
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-| Hard Drive Space | 250 GB required |
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+| Hard Drive Space | ~400 GB required |
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| Operating System | Linux, OS X and other UNIX |
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| Privileges | Root account (Linux) or Administrator account (Mac) |
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| network | Outbound http, rsync (ports 80 and 873, 8080) |
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### Approximate size per Branch
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| Branch | size |
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| ------------ | ------ |
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-| i386-mac | 86Gb |
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-| x86_64-linux | 105Gb |
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-| shared files | 12Gb |
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+| i386-mac | 175Gb |
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+| x86_64-linux | 210Gb |
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+| shared files | 18Gb |
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+
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+[Size breakdown of titles in a typical installation](size_graph)
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Email [accounts@sbgrid.org](accounts@sbgrid.org) to request the installation script for the software. Be sure to include the following information in your email:
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