modulefiles.md
... ...
@@ -20,22 +20,75 @@ in tcsh
20 20
21 21
The above command may be added to your shell startup files or your site Administrator may update the system wide path.
22 22
23
-## Application only
24
-
25
-## Full SBGrid environment
23
+## Application modules example, bash
24
+
25
+```
26
+ $ export MODULEPATH=/programs/share/modulefiles/x86_64-linux/sbgrid #:"$MODULEPATH"
27
+ $ ml avail
28
+
29
+---------------------- /programs/share/modulefiles/x86_64-linux/sbgrid -----------------------
30
+ 2dx/3.3.0 fasta/36.3.8d profphd/1.0.38
31
+ 2dx/3.4.2 (D) fasta/36.3.8g promals/20120412
32
+ 3dfsc/3.0 fasta/36.3.8h propka/3.4.0
33
+ 3dna/2.3 fasta/36.3.8i (D) prospect/1.0
34
+ 3dna/2.3-20160402 fastmodelfree/20060221 proteinmpnn/20220819
35
+ 3dna/2.3-20170208 fdt/0.24.0 proteus/3.0
36
+ 3dna/2.3.1-20170624 fdt/0.25.1 protomo/1.1.4
37
+ 3dna/2.4 fdt/0.26.3 (D) protomo/2.0.9
38
+ 3dna/2.4.4 (D) ffmpeg/3.2.4 protomo/2.2.0
39
+...
40
+```
41
+
42
+## Full SBGrid environment module example, bash
26 43
27 44
### Load
45
+```
46
+$ export MODULEPATH=/programs/share/modulefiles/x86_64-linux:"$MODULEPATH"
47
+
48
+$ ml load sbgrid/rc
49
+Loading SBGrid
50
+********************************************************************************
51
+ Software Support by SBGrid (www.sbgrid.org)
52
+********************************************************************************
53
+
54
+ SBGrid was developed with support from its members, Harvard Medical School,
55
+ HHMI, and NSF. If use of SBGrid compiled software was an important element
56
+ in your publication, please include the following reference in your work:
57
+
58
+ Software used in the project was installed and configured by SBGrid.
59
+ cite: eLife 2013;2:e01456, Collaboration gets the most out of software.
60
+********************************************************************************
61
+ SBGrid installation last updated: 2024-05-03
62
+ Please submit bug reports and help requests to: <bugs@sbgrid.org> or
63
+ <https://sbgrid.org/bugs>
64
+ For additional information visit https://sbgrid.org/wiki
65
+********************************************************************************
66
+
67
+```
28 68
29
-Loading the sbgrid/biogrids module initializes the entire environment and not individual applications. The module determines if you are using bash or tcsh and loads the shell appropriate environment using the same command for both tcsh and bash.
69
+or
30 70
31
- $ module load sbgrid
32
- Loading SBGrid
33
- ********************************************************************************
71
+```
72
+$ ml load sbgrid/shrc
73
+Loading SBGrid
74
+********************************************************************************
34 75
Software Support by SBGrid (www.sbgrid.org)
35
- ********************************************************************************
36
- SBGrid Announcements
37
- ... "remainder of startup message"
38
- $
76
+********************************************************************************
77
+
78
+ SBGrid was developed with support from its members, Harvard Medical School,
79
+ HHMI, and NSF. If use of SBGrid compiled software was an important element
80
+ in your publication, please include the following reference in your work:
81
+
82
+ Software used in the project was installed and configured by SBGrid.
83
+ cite: eLife 2013;2:e01456, Collaboration gets the most out of software.
84
+********************************************************************************
85
+ SBGrid installation last updated: 2024-05-03
86
+ Please submit bug reports and help requests to: <bugs@sbgrid.org> or
87
+ <https://sbgrid.org/bugs>
88
+ For additional information visit https://sbgrid.org/wiki
89
+********************************************************************************
90
+
91
+```
39 92
40 93
### Unload
41 94