aebebef1635f38a64e3b7486843936e35bf213d5
coot.md
... | ... | @@ -46,11 +46,48 @@ $ coot --sbapp:l |
46 | 46 | |
47 | 47 | The executable `coot` is present in the titles **ccp4, ccpem, and coot**. |
48 | 48 | |
49 | +To see all the titles with details use `--sbapp:L` |
|
50 | + |
|
51 | +``` |
|
52 | +$ coot --sbapp:L |
|
53 | + |
|
54 | + Titles containing coot |
|
55 | + Title 1 of 3: Version information for: /programs/x86_64-linux/ccp4 |
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56 | + |
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57 | +Default version: 7.1 |
|
58 | +In-use version: 7.1 |
|
59 | + |
|
60 | +Installed versions: 7.1 7.1.006 7.0 7.0.078 6.3.0 |
|
61 | +Other available versions: 7.1.006 7.0 7.0.078 6.3.0 |
|
62 | +Overrides use this shell variable: CCP4_X |
|
63 | + |
|
64 | + Title 2 of 3: Version information for: /programs/x86_64-linux/ccpem |
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65 | + |
|
66 | +Default version: 1.4.1 |
|
67 | +In-use version: 1.4.1 |
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68 | + |
|
69 | +Installed versions: 1.4.1 1.4.0 1.3.0 20200722 |
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70 | +Other available versions: 1.4.0 1.3.0 20200722 |
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71 | +Overrides use this shell variable: CCPEM_X |
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72 | + |
|
73 | + Title 3 of 3: Version information for: /programs/x86_64-linux/coot |
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74 | + |
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75 | +Default version: 0.9.1 |
|
76 | +In-use version: 0.9.1 |
|
77 | + |
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78 | +Installed versions: 0.9.1 0.8.9.2-pre-revision-7884 0.8.9 0.8.8 |
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79 | +Other available versions: 0.8.9.2-pre-revision-7884 0.8.9 0.8.8 |
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80 | +Overrides use this shell variable: COOT_X │··········· |
|
81 | +``` |
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82 | + |
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49 | 83 | ### "What version does this coot executable come from?" |
50 | -Running *sbgrid-info -l* will print the available versions for a title. |
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84 | +Using `sbapp:d` will print the title and version along with the available versions for the title. |
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51 | 85 | |
52 | 86 | ``` |
53 | - $ sbgrid-info -l ccp4 |
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87 | +$ coot --sbapp:d |
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88 | + |
|
89 | +Capsule:coot using ccp4 version 7.1 |
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90 | + |
|
54 | 91 | Version information for: /programs/x86_64-linux/ccp4 |
55 | 92 | |
56 | 93 | Default version: 7.1 |
... | ... | @@ -58,7 +95,7 @@ In-use version: 7.1 |
58 | 95 | |
59 | 96 | Installed versions: 7.1 7.1.006 7.0 7.0.078 6.3.0 |
60 | 97 | Other available versions: 7.1.006 7.0 7.0.078 6.3.0 |
61 | -Overrides use this shell variable: CCP4_X |
|
98 | +Overrides use this shell variable: CCP4_X │··········· |
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62 | 99 | ``` |
63 | 100 | |
64 | 101 | We are running `coot` from ccp4 version 7.1 and there are several other versions available. |
... | ... | @@ -142,10 +179,13 @@ This is the latest version. To switch to an older version, just set the COOT_X v |
142 | 179 | [with guile 1.8.8 embedded] |
143 | 180 | ``` |
144 | 181 | |
145 | -Now, let's change `coot` to come from CCP4 and check the version : |
|
182 | +To return `coot` to come from CCP4, the SBGrid default remove the config file: |
|
146 | 183 | |
147 | 184 | ``` |
148 | -echo ccp4 > ~/.sbgrid_capsule/coot |
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185 | + $rm ~/.sbgrid_capsule/coot |
|
186 | + |
|
187 | + $ coot --sbwhich |
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188 | +/programs/x86_64-linux/ccp4/7.1/ccp4-7.1/bin/coot |
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149 | 189 | |
150 | 190 | $ coot --version |
151 | 191 | 0.9 (revision-count 9932) |