examples.md
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@@ -7,7 +7,7 @@ The following pages provide usage info and examples for select applications in t
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- [ALPHAFOLD3](examples/alphafold3)
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- [AlphaPulldown](examples/alphapulldown_example)
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- [Arp/Warp registration](examples/arpwarp_registration)
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-- [[BOLTZ 2.1.1]]
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+- [BOLTZ 2.1.1](examples/BOLTZ)
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- [CARELESS](examples/careless)
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- [DiffDock](examples/diffdock)
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- [DomainSeeker](examples/DomainSeeker)
examples/BOLTZ 2.1.1.md
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@@ -1,27 +0,0 @@
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-```
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-
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-#!/usr/bin/env bash
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-
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-## BOLTZ 2.1.1 example
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-## https://github.com/jwohlwend/boltz
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-##
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-## help@sbgrid.org
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-## June 13, 2025
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-
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-## Clone boltz github repository to get examples
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-git clone https://github.com/jwohlwend/boltz
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-
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-## Start SBGrid environment
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-source /programs/sbgrid.shrc
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-export BOLTZ_1_X=2.1.1
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-
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-# Run boltz/examples yaml based prediction
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-export EXAMPLE_DIR=$(pwd)/boltz/examples
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-export MY_YAML=${EXAMPLE_DIR}/affinity.yaml
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-
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-boltz predict ${MY_YAML} --use_msa_server \
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---cache $(pwd) \
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---accelerator gpu \
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---devices 4
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-
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-```
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\ No newline at end of file
examples/BOLTZ.md
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@@ -0,0 +1,27 @@
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+```
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+
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+#!/usr/bin/env bash
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+
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+## BOLTZ 2.1.1 example
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+## https://github.com/jwohlwend/boltz
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+##
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+## help@sbgrid.org
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+## June 13, 2025
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+
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+## Clone boltz github repository to get examples
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+git clone https://github.com/jwohlwend/boltz
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+
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+## Start SBGrid environment
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+source /programs/sbgrid.shrc
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+export BOLTZ_1_X=2.1.1
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+
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+# Run boltz/examples yaml based prediction
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+export EXAMPLE_DIR=$(pwd)/boltz/examples
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+export MY_YAML=${EXAMPLE_DIR}/affinity.yaml
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+
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+boltz predict ${MY_YAML} --use_msa_server \
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+--cache $(pwd) \
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+--accelerator gpu \
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+--devices 4
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+
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+```
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\ No newline at end of file