82d2a7c59f93e1e392e0fb65b6d66634eb674f42
admin_overrides.md
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1 | -## Site Administrator Overrides |
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2 | 1 | |
2 | +## Site Administrator Overrides |
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3 | 3 | SBGrid installations allow site-level software control for Administrators |
4 | 4 | |
5 | +- [Software Blacklist](#software-blacklist) |
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6 | +- [Administrator Software Version Overrides](#administrator-software-version-overrides) |
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7 | +- [Precedence](#precedence) |
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8 | + |
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9 | + |
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5 | 10 | ### Software Blacklist |
6 | 11 | Site administrators can prevent the shell initialization files from configuring software on a host by creating an empty file at |
7 | 12 |
capsules.md
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1 | 1 | # SBGrid software environment |
2 | + |
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3 | +- [Overview](#overview) |
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4 | +- [Getting started](#getting-started) |
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5 | + - [sbcap - Example](#getting-started_sbcap-example) |
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6 | +- [Usage - Capsule Environment for SBGrid](#usage-capsule-environment-for-sbgrid) |
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7 | + - [Overrides - managing versions :](#usage-capsule-environment-for-sbgrid_overrides-managing-versions) |
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8 | + - [Managing Duplicate executables](#usage-capsule-environment-for-sbgrid_managing-duplicate-executables) |
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9 | + - [EXAMPLES:](#usage-capsule-environment-for-sbgrid_examples) |
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10 | + |
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2 | 11 | ## Overview |
3 | 12 | |
4 | 13 | SBGrid is has a new software environment which is significantly faster than the older 'monolithic' shell environment. |
getting_started.md
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1 | 1 | ## Getting Started |
2 | 2 | |
3 | +- [Using the SBGrid software collection](#using-the-sbgrid-software-collection) |
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4 | +- [Making the shell configuration automatic](#making-the-shell-configuration-automatic) |
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5 | +- [Setting an alias](#setting-an-alias) |
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6 | + |
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3 | 7 | ### Using the SBGrid software collection |
4 | 8 | The SBGrid software collection can be found installed at **/programs**. |
5 | 9 | All software in the SBGrid collection is run from the the command line in a terminal. Do set up the shell environment the terminal to run the programs, you will need to initialize the SBGrid environment. |
installation_overview.md
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1 | 1 | ## Installing the SBGrid software collection |
2 | 2 | |
3 | +- [Installing the software](#installing-the--software) |
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4 | +- [Supported Operating Systems](#supported-operating-systems) |
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5 | + - [Linux](#supported-operating-systems_linux) |
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6 | + - [OS X Intel](#supported-operating-systems_os-x-intel) |
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7 | + - [OS X PowerPC](#supported-operating-systems_os-x-powerpc) |
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8 | + - [IRIX](#supported-operating-systems_irix) |
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9 | + |
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10 | +### Installing the software |
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11 | + |
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3 | 12 | The SBGrid Software Suite contains 300+ Scientific software applications for [Linux and OS X](operatingsystems). |
4 | 13 | |
5 | 14 | The software can be installed using one of 3 methods: |