managing_install.md
... ...
@@ -15,7 +15,7 @@ Software installation and update are initiated from your local server at your si
15 15
16 16
| Installation Requirements | |
17 17
| ------------------------- | ----------------------------------------------------|
18
-| Hard Drive Space | 250 GB required |
18
+| Hard Drive Space | ~400 GB required |
19 19
| Operating System | Linux, OS X and other UNIX |
20 20
| Privileges | Root account (Linux) or Administrator account (Mac) |
21 21
| network | Outbound http, rsync (ports 80 and 873, 8080) |
... ...
@@ -24,9 +24,11 @@ Software installation and update are initiated from your local server at your si
24 24
### Approximate size per Branch
25 25
| Branch | size |
26 26
| ------------ | ------ |
27
-| i386-mac | 86Gb |
28
-| x86_64-linux | 105Gb |
29
-| shared files | 12Gb |
27
+| i386-mac | 175Gb |
28
+| x86_64-linux | 210Gb |
29
+| shared files | 18Gb |
30
+
31
+[Size breakdown of titles in a typical installation](size_graph.md)
30 32
31 33
Email [accounts@sbgrid.org](accounts@sbgrid.org) to request the installation script for the software. Be sure to include the following information in your email:
32 34
size_graph.md
... ...
@@ -0,0 +1,659 @@
1
+## Size breakdown for a typical SBGrid installation -- 20161201
2
+
3
+**Actual packages installed by site vary depending on licensing and requests. Packages can be removed on request.**
4
+
5
+```
6
+210.8G x86_64-linux [++++++++++++++++++++++++++++++++++++++++++++++]
7
+173.2G i386-mac [+++++++++++++++++++++++++++++++++++++ ]
8
+ 18.0G share [+++ ]
9
+ 1.9K local [ ]
10
+```
11
+
12
+### x86_64-linux ( 210.8G )
13
+```
14
+ 24.5G schrodinger [+++++++++++++++++++++++++++++++++++]
15
+ 16.6G rosetta [+++++++++++++++++++++++ ]
16
+ 15.7G phenix [++++++++++++++++++++++ ]
17
+ 10.5G ccp4 [++++++++++++++ ]
18
+ 8.2G system [+++++++++++ ]
19
+ 6.7G scipion [+++++++++ ]
20
+ 6.2G ambertools [++++++++ ]
21
+ 6.1G coot [++++++++ ]
22
+ 5.8G orca [++++++++ ]
23
+ 5.5G ilastik [+++++++ ]
24
+ 5.3G pyrosetta [+++++++ ]
25
+ 5.2G spider [+++++++ ]
26
+ 4.9G anaconda [+++++++ ]
27
+ 4.2G xplor [+++++ ]
28
+ 3.9G nmrpipe [+++++ ]
29
+ 3.7G xmipp [+++++ ]
30
+ 3.5G molprobity [++++ ]
31
+ 3.3G dials [++++ ]
32
+ 3.1G divcon [++++ ]
33
+ 3.0G ccp4mg [++++ ]
34
+ 2.8G spring [+++ ]
35
+ 2.6G dynamo [+++ ]
36
+ 2.4G python [+++ ]
37
+ 2.3G mageckvispr [+++ ]
38
+ 2.2G atsas [+++ ]
39
+ 2.2G chimera [+++ ]
40
+ 2.2G pymol [+++ ]
41
+ 2.1G eman2 [++ ]
42
+ 2.1G relion [++ ]
43
+ 1.9G blastplus [++ ]
44
+ 1.7G rstudio [++ ]
45
+ 1.6G geneious [++ ]
46
+ 1.5G peet [++ ]
47
+ 1.2G frealign [+ ]
48
+ 1.1G csrosetta [+ ]
49
+ 1.1G arp_warp [+ ]
50
+ 1.1G imp [+ ]
51
+ 1.1G iplt [+ ]
52
+ 1.0G cns [+ ]
53
+ 1.0G bsoft [+ ]
54
+998.6M haddock [+ ]
55
+968.3M ccpnmr [+ ]
56
+933.4M buster [+ ]
57
+826.3M shiftx2 [+ ]
58
+819.2M emboss [+ ]
59
+812.9M autoproc [+ ]
60
+807.6M em2em [+ ]
61
+783.1M mgltools [+ ]
62
+719.1M whatif [+ ]
63
+717.9M rcsbtools [+ ]
64
+702.1M imagic [ ]
65
+643.8M r [ ]
66
+612.8M whatcheck [ ]
67
+599.4M qt [ ]
68
+575.7M vlion [ ]
69
+560.3M fiji [ ]
70
+532.9M imagemagick [ ]
71
+494.4M 3dna [ ]
72
+472.7M caver [ ]
73
+470.3M shelx-2013 [ ]
74
+442.1M balbes [ ]
75
+427.7M mrc [ ]
76
+416.9M ultrascan3 [ ]
77
+408.4M gromacs [ ]
78
+405.6M relax [ ]
79
+401.7M talosn [ ]
80
+387.0M pdb_redo [ ]
81
+381.8M hkl [ ]
82
+374.6M dtrek_free [ ]
83
+358.3M imod [ ]
84
+352.1M motioncorr [ ]
85
+334.9M modeller [ ]
86
+333.2M 2dx [ ]
87
+313.6M gorgon [ ]
88
+297.7M perl [ ]
89
+257.6M albula [ ]
90
+251.1M simple [ ]
91
+235.0M lafire [ ]
92
+225.9M arcimboldo_lite [ ]
93
+219.0M mifit [ ]
94
+215.6M apbs [ ]
95
+210.9M openbabel [ ]
96
+209.4M imagej [ ]
97
+206.8M solve [ ]
98
+204.0M cryoemtools [ ]
99
+192.6M shelx [ ]
100
+190.1M theseus [ ]
101
+188.9M crystfel [ ]
102
+188.6M caver_analyst [ ]
103
+186.5M avogadro [ ]
104
+179.5M norma [ ]
105
+179.4M blast [ ]
106
+177.5M sassie [ ]
107
+175.3M namd [ ]
108
+169.4M jalview [ ]
109
+167.2M vmd [ ]
110
+162.8M specview [ ]
111
+158.1M gctf [ ]
112
+154.4M mafft [ ]
113
+153.6M imod_nma [ ]
114
+153.3M tigris [ ]
115
+152.7M ctffind4 [ ]
116
+147.9M pytom [ ]
117
+144.8M tcltk [ ]
118
+139.8M frodock [ ]
119
+132.1M imosflm [ ]
120
+131.7M aria [ ]
121
+131.0M spire [ ]
122
+130.4M raw [ ]
123
+127.2M fuda [ ]
124
+126.7M openmm [ ]
125
+123.1M fasta [ ]
126
+120.5M igv [ ]
127
+117.8M unio [ ]
128
+106.4M gamma [ ]
129
+102.3M breseq [ ]
130
+100.3M imodfit [ ]
131
+ 97.4M prospect [ ]
132
+ 89.6M urox [ ]
133
+ 88.6M xdsgui [ ]
134
+ 86.8M emip [ ]
135
+ 85.7M wxpython [ ]
136
+ 79.5M tcoffee [ ]
137
+ 77.3M vmd-xplor [ ]
138
+ 76.7M gnuplot [ ]
139
+ 73.3M cara [ ]
140
+ 72.6M sparky [ ]
141
+ 71.4M xds [ ]
142
+ 69.7M ghostscript [ ]
143
+ 68.5M suprim [ ]
144
+ 67.0M protomo [ ]
145
+ 66.8M globus_connect_personal [ ]
146
+ 66.7M rsref [ ]
147
+ 65.8M eman [ ]
148
+ 60.3M priism [ ]
149
+ 57.1M mosflm [ ]
150
+ 56.7M pdb2pqr [ ]
151
+ 55.7M como [ ]
152
+ 55.5M gefrealign [ ]
153
+ 54.1M auto3dem [ ]
154
+ 48.3M mag_distortion [ ]
155
+ 47.9M dock [ ]
156
+ 47.5M bnp [ ]
157
+ 47.4M dps [ ]
158
+ 46.4M unblur [ ]
159
+ 45.6M ultrascan [ ]
160
+ 45.4M saxsview [ ]
161
+ 44.0M mmtsb [ ]
162
+ 42.1M ruby [ ]
163
+ 42.1M gerard [ ]
164
+ 41.7M resmap [ ]
165
+ 40.7M simulaid [ ]
166
+ 40.3M refmac [ ]
167
+ 40.0M nmrview [ ]
168
+ 39.5M staden [ ]
169
+ 35.8M mead [ ]
170
+ 34.1M graphviz [ ]
171
+ 33.0M appion [ ]
172
+ 32.7M sharp [ ]
173
+ 32.3M scatter [ ]
174
+ 30.7M stamp [ ]
175
+ 30.3M pymmlib [ ]
176
+ 29.9M profphd [ ]
177
+ 29.5M fpocket [ ]
178
+ 29.5M eden [ ]
179
+ 28.3M procheck [ ]
180
+ 28.1M ringer [ ]
181
+ 27.9M sam [ ]
182
+ 27.2M phases [ ]
183
+ 26.5M scwrl3 [ ]
184
+ 26.1M summovie [ ]
185
+ 25.6M miso [ ]
186
+ 25.3M ctf [ ]
187
+ 25.0M rasmol [ ]
188
+ 23.2M ihrsr [ ]
189
+ 22.1M r2r [ ]
190
+ 21.7M nessy [ ]
191
+ 21.6M finddqe [ ]
192
+ 21.6M zephyr [ ]
193
+ 21.5M snb [ ]
194
+ 21.4M scwrl4 [ ]
195
+ 20.1M wattos [ ]
196
+ 20.1M rdock [ ]
197
+ 19.7M bbhp [ ]
198
+ 19.3M concoord [ ]
199
+ 18.4M hole [ ]
200
+ 18.2M clustal [ ]
201
+ 18.2M rsref2000 [ ]
202
+ 17.7M escet [ ]
203
+ 17.7M adxv [ ]
204
+ 17.6M phylip [ ]
205
+ 17.4M cmview [ ]
206
+ 17.2M replace [ ]
207
+ 17.1M direx [ ]
208
+ 17.0M mole [ ]
209
+ 16.5M redcat [ ]
210
+ 16.3M remediator [ ]
211
+ 16.2M molmol [ ]
212
+ 16.0M mrtailor [ ]
213
+ 15.5M xdrawchem [ ]
214
+ 15.5M dssp [ ]
215
+ 15.3M ligplus [ ]
216
+ 15.2M knuspr [ ]
217
+ 15.2M gautomatch [ ]
218
+ 15.0M main [ ]
219
+ 14.5M situs [ ]
220
+ 14.2M promals [ ]
221
+ 14.1M xeasy [ ]
222
+ 13.6M epmr [ ]
223
+ 13.4M assemble2 [ ]
224
+ 13.4M o [ ]
225
+ 13.2M rnamlview [ ]
226
+ 13.2M xdsme [ ]
227
+ 12.7M povray [ ]
228
+ 12.5M pft3dr [ ]
229
+ 11.9M phoelix [ ]
230
+ 11.7M mcce [ ]
231
+ 11.6M modelfree [ ]
232
+ 11.4M particle [ ]
233
+ 11.4M finchtv [ ]
234
+ 11.3M tensor [ ]
235
+ 10.8M samtools [ ]
236
+ 10.7M frealix [ ]
237
+ 10.5M hydropro [ ]
238
+ 10.5M dyndom3d [ ]
239
+ 10.0M x3d [ ]
240
+ 9.9M espript [ ]
241
+ 9.9M raster3d [ ]
242
+ 9.3M embfactor [ ]
243
+ 9.3M entangle [ ]
244
+ 9.0M netblast [ ]
245
+ 8.9M bcftools [ ]
246
+ 8.8M isthms [ ]
247
+ 8.5M amps [ ]
248
+ 8.3M rnastructure [ ]
249
+ 7.9M elves [ ]
250
+ 7.3M spdbv [ ]
251
+ 7.0M module [ ]
252
+ 6.8M electra [ ]
253
+ 6.2M pgplot [ ]
254
+ 6.1M motioncor2 [ ]
255
+ 6.0M a2ps [ ]
256
+ 5.9M aqua [ ]
257
+ 5.6M xv [ ]
258
+ 5.6M nucplot [ ]
259
+ 5.6M somore [ ]
260
+ 5.2M delphi [ ]
261
+ 5.1M grace [ ]
262
+ 5.0M veda [ ]
263
+ 4.6M plotutils [ ]
264
+ 4.4M weblogo [ ]
265
+ 4.3M curvesplus [ ]
266
+ 4.2M xdsi [ ]
267
+ 4.2M dino [ ]
268
+ 4.1M zdock [ ]
269
+ 4.0M vina [ ]
270
+ 3.8M solvate [ ]
271
+ 3.6M nedit [ ]
272
+ 3.6M ace2 [ ]
273
+ 3.6M xdsstat [ ]
274
+ 3.3M ssaha2 [ ]
275
+ 3.3M mmc [ ]
276
+ 3.2M h5toxds [ ]
277
+ 3.2M dyndom [ ]
278
+ 3.1M scc [ ]
279
+ 3.1M pdbstat [ ]
280
+ 3.1M superfold [ ]
281
+ 2.7M qushape [ ]
282
+ 2.6M signature [ ]
283
+ 2.6M aline [ ]
284
+ 2.5M alscript [ ]
285
+ 2.5M mammoth-mult [ ]
286
+ 2.5M primer3 [ ]
287
+ 2.4M tiltpicker [ ]
288
+ 2.3M dssr [ ]
289
+ 2.1M dogpicker [ ]
290
+ 2.1M bfactor [ ]
291
+ 2.0M hbplus [ ]
292
+ 2.0M surfv [ ]
293
+ 2.0M plotmtv [ ]
294
+ 2.0M pales [ ]
295
+ 1.9M quilt [ ]
296
+ 1.9M diffmap [ ]
297
+ 1.8M crop [ ]
298
+ 1.8M pdbfixer [ ]
299
+ 1.8M xdscc12 [ ]
300
+ 1.7M bin2mrc [ ]
301
+ 1.7M rnaview [ ]
302
+ 1.6M best [ ]
303
+ 1.6M molscript [ ]
304
+ 1.5M wasp [ ]
305
+ 1.5M xds-viewer [ ]
306
+ 1.5M madbend [ ]
307
+ 1.4M curves [ ]
308
+ 1.4M xrayview [ ]
309
+ 1.4M reduce [ ]
310
+ 1.3M autodock [ ]
311
+ 1.3M probe [ ]
312
+ 1.3M randomize [ ]
313
+ 1.2M untangle [ ]
314
+ 1.2M raspnmr [ ]
315
+ 1.2M cpmgfit [ ]
316
+ 1.0M muscle [ ]
317
+992.2K surfnet [ ]
318
+990.8K pdb-care [ ]
319
+926.8K hkl2map [ ]
320
+911.1K rmerge [ ]
321
+895.0K ligplot [ ]
322
+891.9K naccess [ ]
323
+821.0K hydronmr [ ]
324
+738.2K dowser [ ]
325
+641.8K bobscript [ ]
326
+635.8K rmeasure [ ]
327
+582.8K molphy [ ]
328
+539.8K qpack [ ]
329
+485.3K profit [ ]
330
+427.3K shapemapper [ ]
331
+416.5K samviewer [ ]
332
+367.0K probcons [ ]
333
+363.7K matt [ ]
334
+334.9K tkdiff [ ]
335
+297.1K mes [ ]
336
+212.2K amigos2 [ ]
337
+185.2K protskin [ ]
338
+124.1K nuccyl [ ]
339
+ 77.4K yup [ ]
340
+ 76.0K surfrace [ ]
341
+ 63.9K fastmodelfree [ ]
342
+ 23.7K pipe2xeasy [ ]
343
+ 2.3K clustal-omega [ ]
344
+ 109 pandas [ ]
345
+ 108 numpy [ ]
346
+ 107 pysam [ ]
347
+ 106 pytz [ ]
348
+ 95 rcrane [ ]
349
+ 85 ccpnmr-chembuild [ ]
350
+ 82 sparx [ ]
351
+ 74 biopython [ ]
352
+ 72 ipython [ ]
353
+ 70 scipy [ ]
354
+ 61 ebseq [ ]
355
+ 34 bioperl [ ]
356
+```
357
+
358
+### i386-mac ( 173.2G )
359
+
360
+```
361
+ 25.8G schrodinger [+++++++++++++++++++++++++++++++++++++]
362
+ 13.0G rosetta [++++++++++++++++++ ]
363
+ 11.4G phenix [++++++++++++++++ ]
364
+ 9.1G ccp4 [+++++++++++++ ]
365
+ 8.8G pyrosetta [++++++++++++ ]
366
+ 6.0G ambertools [++++++++ ]
367
+ 5.3G orca [+++++++ ]
368
+ 4.9G spring [+++++++ ]
369
+ 4.1G ilastik [+++++ ]
370
+ 3.8G anaconda [+++++ ]
371
+ 3.8G spider [+++++ ]
372
+ 3.4G csrosetta [++++ ]
373
+ 3.3G pymol [++++ ]
374
+ 3.2G python [++++ ]
375
+ 3.2G molprobity [++++ ]
376
+ 3.1G xmipp [++++ ]
377
+ 2.8G nmrpipe [++++ ]
378
+ 2.7G blastplus [+++ ]
379
+ 2.5G system [+++ ]
380
+ 2.5G ccp4mg [+++ ]
381
+ 2.5G dials [+++ ]
382
+ 2.5G atsas [+++ ]
383
+ 2.4G xplor [+++ ]
384
+ 2.3G chimera [+++ ]
385
+ 1.6G mageckvispr [++ ]
386
+ 1.6G relax [++ ]
387
+ 1.4G geneious [+ ]
388
+ 1.2G arp_warp [+ ]
389
+ 1.2G coot [+ ]
390
+ 1.1G ccpnmr [+ ]
391
+ 1.1G cns [+ ]
392
+ 1.1G whatcheck [+ ]
393
+1021.4M eman2 [+ ]
394
+1003.1M imp [+ ]
395
+990.7M shiftx2 [+ ]
396
+906.3M iplt [+ ]
397
+888.3M 2dx [+ ]
398
+862.8M mgltools [+ ]
399
+843.5M emboss [+ ]
400
+811.6M divcon [+ ]
401
+805.5M rcsbtools [+ ]
402
+802.7M em2em [+ ]
403
+705.1M specview [ ]
404
+701.8M r [ ]
405
+652.0M buster [ ]
406
+565.4M frealign [ ]
407
+555.9M modeller [ ]
408
+552.2M bsoft [ ]
409
+534.1M imod [ ]
410
+503.0M blast [ ]
411
+499.2M ultrascan3 [ ]
412
+496.2M 3dna [ ]
413
+483.4M solve [ ]
414
+472.7M caver [ ]
415
+466.7M gromacs [ ]
416
+463.5M fiji [ ]
417
+455.4M gorgon [ ]
418
+452.4M balbes [ ]
419
+428.3M dynamo [ ]
420
+395.1M talosn [ ]
421
+379.9M pymmlib [ ]
422
+372.0M hkl [ ]
423
+366.7M autoproc [ ]
424
+353.8M dssp [ ]
425
+335.7M imosflm [ ]
426
+330.9M qt [ ]
427
+325.0M relion [ ]
428
+323.8M mrc [ ]
429
+305.2M ultrascan [ ]
430
+301.2M rstudio [ ]
431
+296.9M simple [ ]
432
+274.7M albula [ ]
433
+273.7M avogadro [ ]
434
+254.0M imagemagick [ ]
435
+236.1M shelx-2013 [ ]
436
+227.4M lafire [ ]
437
+213.8M eman [ ]
438
+204.7M mafft [ ]
439
+200.6M caver_analyst [ ]
440
+196.0M cryoemtools [ ]
441
+193.6M theseus [ ]
442
+187.9M spdbv [ ]
443
+183.6M perl [ ]
444
+182.9M dtrek_free [ ]
445
+171.6M rnastructure [ ]
446
+170.4M auto3dem [ ]
447
+164.8M apbs [ ]
448
+164.6M spire [ ]
449
+158.4M tcltk [ ]
450
+151.4M igv [ ]
451
+146.0M tigris [ ]
452
+143.8M unio [ ]
453
+143.0M raw [ ]
454
+142.7M sparky [ ]
455
+131.3M shelx [ ]
456
+131.1M nmrview [ ]
457
+126.0M vmd [ ]
458
+125.6M crystfel [ ]
459
+123.9M mosflm [ ]
460
+120.8M openmm [ ]
461
+120.3M refmac [ ]
462
+119.9M jalview [ ]
463
+111.5M breseq [ ]
464
+107.2M clustal [ ]
465
+105.5M xdsgui [ ]
466
+104.8M dock [ ]
467
+102.2M fasta [ ]
468
+102.0M ghostscript [ ]
469
+100.9M gamma [ ]
470
+ 91.5M tcoffee [ ]
471
+ 90.0M graphviz [ ]
472
+ 77.2M vmd-xplor [ ]
473
+ 74.3M wxpython [ ]
474
+ 67.3M xds [ ]
475
+ 65.8M priism [ ]
476
+ 63.3M raspnmr [ ]
477
+ 63.1M gerard [ ]
478
+ 62.2M bbhp [ ]
479
+ 58.5M pytom [ ]
480
+ 56.0M como [ ]
481
+ 55.1M ctffind4 [ ]
482
+ 54.8M emip [ ]
483
+ 54.7M sharp [ ]
484
+ 53.4M namd [ ]
485
+ 51.4M finchtv [ ]
486
+ 50.6M pdb2pqr [ ]
487
+ 49.8M openbabel [ ]
488
+ 48.5M openmotif [ ]
489
+ 46.8M staden [ ]
490
+ 44.2M mmtsb [ ]
491
+ 43.6M suprim [ ]
492
+ 43.5M lib [ ]
493
+ 42.9M ligplot [ ]
494
+ 37.8M phoelix [ ]
495
+ 37.4M simulaid [ ]
496
+ 35.6M profphd [ ]
497
+ 34.8M haddock [ ]
498
+ 34.3M main [ ]
499
+ 33.7M adxv [ ]
500
+ 33.4M sam [ ]
501
+ 32.9M xrayview [ ]
502
+ 32.3M scatter [ ]
503
+ 31.5M cara [ ]
504
+ 31.4M aria [ ]
505
+ 31.3M scwrl4 [ ]
506
+ 31.0M knuspr [ ]
507
+ 30.5M situs [ ]
508
+ 29.2M stamp [ ]
509
+ 29.2M ruby [ ]
510
+ 29.1M pdb_redo [ ]
511
+ 28.1M ringer [ ]
512
+ 27.0M fpocket [ ]
513
+ 26.2M pft3dr [ ]
514
+ 25.8M o [ ]
515
+ 25.5M globus_connect_personal [ ]
516
+ 24.5M imodfit [ ]
517
+ 24.4M phylip [ ]
518
+ 24.0M raster3d [ ]
519
+ 22.6M gnuplot [ ]
520
+ 21.9M molmol [ ]
521
+ 20.5M appion [ ]
522
+ 20.4M ace2 [ ]
523
+ 19.7M imagej [ ]
524
+ 19.6M direx [ ]
525
+ 19.2M promals [ ]
526
+ 18.9M resmap [ ]
527
+ 18.6M eden [ ]
528
+ 18.3M ligplus [ ]
529
+ 18.3M miso [ ]
530
+ 17.9M xds-viewer [ ]
531
+ 17.9M ctf [ ]
532
+ 17.4M cmview [ ]
533
+ 17.1M mole [ ]
534
+ 16.9M redcat [ ]
535
+ 16.7M snb [ ]
536
+ 16.4M r2r [ ]
537
+ 16.3M remediator [ ]
538
+ 15.5M mrtailor [ ]
539
+ 15.4M replace [ ]
540
+ 13.4M assemble2 [ ]
541
+ 13.3M netblast [ ]
542
+ 13.2M xdsme [ ]
543
+ 13.1M rnamlview [ ]
544
+ 12.8M povray [ ]
545
+ 12.7M mcce [ ]
546
+ 12.7M reduce [ ]
547
+ 12.5M mpich [ ]
548
+ 11.2M hole [ ]
549
+ 11.2M tensor [ ]
550
+ 10.9M espript [ ]
551
+ 10.9M nessy [ ]
552
+ 10.6M dino [ ]
553
+ 10.5M dyndom3d [ ]
554
+ 10.4M electra [ ]
555
+ 10.4M rasmol [ ]
556
+ 10.0M mead [ ]
557
+ 9.5M openmpi [ ]
558
+ 9.3M entangle [ ]
559
+ 9.3M phases [ ]
560
+ 8.2M surfnet [ ]
561
+ 8.1M pgplot [ ]
562
+ 8.0M procheck [ ]
563
+ 7.9M elves [ ]
564
+ 7.9M particle [ ]
565
+ 7.3M zdock [ ]
566
+ 6.4M grace [ ]
567
+ 6.3M somore [ ]
568
+ 5.9M nucplot [ ]
569
+ 5.7M xv [ ]
570
+ 5.5M amps [ ]
571
+ 5.4M module [ ]
572
+ 5.3M nedit [ ]
573
+ 4.9M vina [ ]
574
+ 4.8M modelfree [ ]
575
+ 4.8M mmc [ ]
576
+ 4.4M a2ps [ ]
577
+ 4.4M epmr [ ]
578
+ 4.4M samtools [ ]
579
+ 4.4M signature [ ]
580
+ 4.3M aqua [ ]
581
+ 4.2M xdsi [ ]
582
+ 3.9M weblogo [ ]
583
+ 3.9M isthms [ ]
584
+ 3.8M delphi [ ]
585
+ 3.8M solvate [ ]
586
+ 3.7M plotutils [ ]
587
+ 3.7M bobscript [ ]
588
+ 3.6M autodock [ ]
589
+ 3.4M ssaha2 [ ]
590
+ 3.3M curvesplus [ ]
591
+ 3.2M pdb-care [ ]
592
+ 3.2M fftw [ ]
593
+ 3.1M bcftools [ ]
594
+ 3.0M aline [ ]
595
+ 3.0M pales [ ]
596
+ 3.0M embfactor [ ]
597
+ 2.8M quilt [ ]
598
+ 2.7M qushape [ ]
599
+ 2.5M dssr [ ]
600
+ 2.4M saxsview [ ]
601
+ 2.4M profit [ ]
602
+ 2.3M rnaview [ ]
603
+ 2.3M diffmap [ ]
604
+ 2.3M dyndom [ ]
605
+ 2.2M mammoth-mult [ ]
606
+ 2.2M plotmtv [ ]
607
+ 2.2M bfactor [ ]
608
+ 2.1M concoord [ ]
609
+ 1.9M xdsstat [ ]
610
+ 1.9M scc [ ]
611
+ 1.8M x3d [ ]
612
+ 1.8M hbplus [ ]
613
+ 1.7M molphy [ ]
614
+ 1.6M curves [ ]
615
+ 1.6M probe [ ]
616
+ 1.5M primer3 [ ]
617
+ 1.4M rmerge [ ]
618
+ 1.2M cpmgfit [ ]
619
+ 1.1M rmeasure [ ]
620
+ 1.1M molscript [ ]
621
+ 1.0M muscle [ ]
622
+878.2K hkl2map [ ]
623
+819.8K best [ ]
624
+723.0K xdscc12 [ ]
625
+683.6K wasp [ ]
626
+622.1K dowser [ ]
627
+597.1K pdbfixer [ ]
628
+527.6K superfold [ ]
629
+522.6K qpack [ ]
630
+483.4K shapemapper [ ]
631
+420.8K surfv [ ]
632
+416.6K samviewer [ ]
633
+396.6K probcons [ ]
634
+380.6K matt [ ]
635
+334.9K tkdiff [ ]
636
+315.3K crop [ ]
637
+298.8K mes [ ]
638
+212.1K amigos2 [ ]
639
+208.5K naccess [ ]
640
+185.1K protskin [ ]
641
+149.8K yup [ ]
642
+122.5K nuccyl [ ]
643
+ 87.5K surfrace [ ]
644
+ 63.9K fastmodelfree [ ]
645
+ 30.6K pipe2xeasy [ ]
646
+ 102 cython [ ]
647
+ 100 pandas [ ]
648
+ 99 numpy [ ]
649
+ 81 ccpnmr-chembuild [ ]
650
+ 74 sparx [ ]
651
+ 73 rcrane [ ]
652
+ 68 biopython [ ]
653
+ 68 ipython [ ]
654
+ 67 pysam [ ]
655
+ 67 scipy [ ]
656
+ 65 bioperl [ ]
657
+ 65 pytz [ ]
658
+ 57 ebseq [ ]
659
+```