coot.md
... ...
@@ -1,4 +1,4 @@
1
-# Setting COOT title and version in SBGrid
1
+# Managing COOT title and version in SBGrid
2 2
COOT is present in several titles and many versions in SBGrid. Selecting the application and version of the `coot` executable can be accomplished on-the-fly in a single step in the SBGrid capsule environment. Here are some examples of managing COOT in SBGrid capsules, but this should work for any application with duplicate executables and multiple versions.
3 3
4 4
To confirm that capsules are enabled, run
... ...
@@ -67,7 +67,7 @@ We are running `coot` from ccp4 version 7.1 and there are several other versions
67 67
SBGrid uses CCP4's `coot` by default, but that can be changed with a configuration file in the ~/.sbgrid_capsules directory. A default title can be specified for any duplicate executable by creating a file with the **name of the executable** that contains a single line with the name of the application. For coot this would be:
68 68
69 69
mkdir -p ~/.sbgrid_capsule
70
- echo echo > ~/.sbgrid_capsule/coot
70
+ echo coot > ~/.sbgrid_capsule/coot
71 71
72 72
If we do this, we can see:
73 73
... ...
@@ -145,7 +145,7 @@ This is the latest version. To switch to an older version, just set the COOT_X v
145 145
Now, let's change `coot` to come from CCP4 and check the version :
146 146
147 147
```
148
-echo echo > ~/.sbgrid_capsule/ccp4
148
+echo ccp4 > ~/.sbgrid_capsule/coot
149 149
150 150
$ coot --version
151 151
0.9 (revision-count 9932)