7d91d0a6a0726a425e4618bc2fe651cb6f06c971
coot.md
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1 | -# Setting COOT title and version in SBGrid |
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1 | +# Managing COOT title and version in SBGrid |
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2 | 2 | COOT is present in several titles and many versions in SBGrid. Selecting the application and version of the `coot` executable can be accomplished on-the-fly in a single step in the SBGrid capsule environment. Here are some examples of managing COOT in SBGrid capsules, but this should work for any application with duplicate executables and multiple versions. |
3 | 3 | |
4 | 4 | To confirm that capsules are enabled, run |
... | ... | @@ -67,7 +67,7 @@ We are running `coot` from ccp4 version 7.1 and there are several other versions |
67 | 67 | SBGrid uses CCP4's `coot` by default, but that can be changed with a configuration file in the ~/.sbgrid_capsules directory. A default title can be specified for any duplicate executable by creating a file with the **name of the executable** that contains a single line with the name of the application. For coot this would be: |
68 | 68 | |
69 | 69 | mkdir -p ~/.sbgrid_capsule |
70 | - echo echo > ~/.sbgrid_capsule/coot |
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70 | + echo coot > ~/.sbgrid_capsule/coot |
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71 | 71 | |
72 | 72 | If we do this, we can see: |
73 | 73 | |
... | ... | @@ -145,7 +145,7 @@ This is the latest version. To switch to an older version, just set the COOT_X v |
145 | 145 | Now, let's change `coot` to come from CCP4 and check the version : |
146 | 146 | |
147 | 147 | ``` |
148 | -echo echo > ~/.sbgrid_capsule/ccp4 |
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148 | +echo ccp4 > ~/.sbgrid_capsule/coot |
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149 | 149 | |
150 | 150 | $ coot --version |
151 | 151 | 0.9 (revision-count 9932) |