size_graph.md
... ...
@@ -1,196 +1,217 @@
1
-## Size breakdown for a typical SBGrid installation -- 20170202
1
+## Size breakdown for a typical SBGrid installation -- 20170622
2 2
3 3
**Actual packages installed by site vary depending on licensing and requests. Packages can be removed on request.**
4 4
5 5
```
6
-232.9G x86_64-linux [++++++++++++++++++++++++++++++++++++++++++++++]
7
-189.2G i386-mac [+++++++++++++++++++++++++++++++++++++ ]
8
- 18.0G share [+++ ]
6
+279.9G x86_64-linux [+++++++++++++++++++++++++++++++++++++++++++++++++++]
7
+212.8G i386-mac [++++++++++++++++++++++++++++++++++++++ ]
8
+ 9.5G share [+ ]
9 9
```
10 10
11 11
### x86_64-linux ( 232.9G )
12 12
13 13
```
14
-24.5G schrodinger [+++++++++++++++++++++++++++++++++++]
15
-16.6G rosetta [+++++++++++++++++++++++ ]
16
-15.7G phenix [++++++++++++++++++++++ ]
17
-10.5G ccp4 [++++++++++++++ ]
18
-10.1G pomona [++++++++++++++ ]
19
-9.5G system [+++++++++++++ ]
20
-6.7G scipion [+++++++++ ]
21
-6.3G spider [++++++++ ]
22
-6.2G ambertools [++++++++ ]
23
-6.1G coot [++++++++ ]
24
-5.8G orca [++++++++ ]
25
-5.5G ilastik [+++++++ ]
26
-5.3G pyrosetta [+++++++ ]
27
-4.9G anaconda [+++++++ ]
28
-4.8G eman2 [++++++ ]
29
-4.7G divcon [++++++ ]
30
-4.4G dials [++++++ ]
31
-4.2G xplor [+++++ ]
32
-3.9G nmrpipe [+++++ ]
33
-3.7G xmipp [+++++ ]
34
-3.5G molprobity [++++ ]
35
-3.0G ccp4mg [++++ ]
36
-2.8G spring [+++ ]
37
-2.6G dynamo [+++ ]
38
-2.6G relion [+++ ]
39
-2.5G python [+++ ]
40
-2.3G mageckvispr [+++ ]
41
-2.2G atsas [+++ ]
42
-2.2G chimera [+++ ]
43
-2.2G pymol [+++ ]
44
-1.9G blastplus [++ ]
45
-1.7G ccpnmr [++ ]
46
-1.7G rstudio [++ ]
47
-1.6G geneious [++ ]
48
-1.5G peet [++ ]
49
-1.2G r [+ ]
50
-1.2G frealign [+ ]
51
-1.1G csrosetta [+ ]
52
-1.1G arp_warp [+ ]
53
-1.1G buster [+ ]
54
-1.1G imp [+ ]
55
-1.1G iplt [+ ]
56
-1.1G autoproc [+ ]
57
-1.0G cns [+ ]
58
-1.0G bsoft [+ ]
14
+33.4G schrodinger [+++++++++++++++++++++++++++++++++++]
15
+27.6G rosetta [++++++++++++++++++++++++++++ ]
16
+16.1G orca [++++++++++++++++ ]
17
+13.7G phenix [++++++++++++++ ]
18
+11.3G eman2 [+++++++++++ ]
19
+10.1G pomona [++++++++++ ]
20
+ 9.3G ccp4 [+++++++++ ]
21
+ 7.6G scipion [+++++++ ]
22
+ 6.8G ilastik [+++++++ ]
23
+ 6.6G dials [++++++ ]
24
+ 6.3G spider [++++++ ]
25
+ 5.5G ambertools [+++++ ]
26
+ 5.4G coot [+++++ ]
27
+ 5.3G pyrosetta [+++++ ]
28
+ 4.9G anaconda [+++++ ]
29
+ 4.2G texlive [++++ ]
30
+ 4.2G xplor [++++ ]
31
+ 3.9G cuda [++++ ]
32
+ 3.9G nmrpipe [++++ ]
33
+ 3.8G divcon [+++ ]
34
+ 3.7G xmipp [+++ ]
35
+ 3.5G molprobity [+++ ]
36
+ 3.0G ccp4mg [+++ ]
37
+ 2.9G relion [+++ ]
38
+ 2.9G sphire [++ ]
39
+ 2.8G spring [++ ]
40
+ 2.7G python [++ ]
41
+ 2.6G dynamo [++ ]
42
+ 2.3G mageckvispr [++ ]
43
+ 2.1G rstudio [++ ]
44
+ 2.1G geneious [++ ]
45
+ 2.0G cp2k [++ ]
46
+ 2.0G atsas [++ ]
47
+ 2.0G system [++ ]
48
+ 1.8G pymol [+ ]
49
+ 1.7G qt [+ ]
50
+ 1.5G chimera [+ ]
51
+ 1.5G ccpnmr [+ ]
52
+ 1.5G peet [+ ]
53
+ 1.2G r [+ ]
54
+ 1.2G blastplus [+ ]
55
+ 1.1G csrosetta [+ ]
56
+ 1.1G imp [+ ]
57
+ 1.1G iplt [+ ]
58
+ 1.0G cns [+ ]
59 59
998.6M haddock [+ ]
60
-826.3M shiftx2 [+ ]
61
-819.2M emboss [+ ]
62
-807.6M em2em [+ ]
63
-783.1M mgltools [+ ]
64
-719.1M whatif [+ ]
65
-717.9M rcsbtools [+ ]
60
+911.4M arp_warp [ ]
61
+877.5M bsoft [ ]
62
+866.6M autoproc [ ]
63
+826.3M shiftx2 [ ]
64
+819.2M emboss [ ]
65
+815.2M chimerax [ ]
66
+808.4M nmrfam-sparky [ ]
67
+803.5M em2em [ ]
68
+783.1M mgltools [ ]
69
+776.9M buster [ ]
70
+770.3M frealign [ ]
71
+760.2M java [ ]
72
+719.1M whatif [ ]
73
+717.9M rcsbtools [ ]
74
+716.8M vtk [ ]
75
+709.9M dock [ ]
66 76
704.3M gctf [ ]
67 77
702.1M imagic [ ]
78
+614.3M mgltools2 [ ]
68 79
612.8M whatcheck [ ]
69
-599.4M qt [ ]
80
+577.0M relax [ ]
70 81
575.7M vlion [ ]
82
+569.7M icmbrowser [ ]
83
+560.7M mono [ ]
71 84
560.3M fiji [ ]
72
-532.9M imagemagick [ ]
73
-494.4M 3dna [ ]
85
+556.6M imagemagick [ ]
86
+554.9M ultrascan3 [ ]
87
+510.1M imod [ ]
88
+477.0M focus [ ]
74 89
472.7M caver [ ]
75
-470.3M shelx-2013 [ ]
76 90
442.1M balbes [ ]
77 91
427.7M mrc [ ]
78
-416.9M ultrascan3 [ ]
79
-408.4M gromacs [ ]
80
-405.6M relax [ ]
92
+407.7M gromacs [ ]
81 93
401.7M talosn [ ]
94
+398.1M eman [ ]
82 95
387.0M pdb_redo [ ]
83
-384.7M sphire [ ]
84
-381.8M hkl [ ]
96
+376.8M namd [ ]
85 97
374.6M dtrek_free [ ]
86 98
367.2M vmd [ ]
87
-358.3M imod [ ]
88 99
352.1M motioncorr [ ]
89
-334.9M modeller [ ]
100
+345.9M modeller [ ]
90 101
333.2M 2dx [ ]
102
+325.3M shelx-2013 [ ]
91 103
313.6M gorgon [ ]
104
+299.6M imagej [ ]
92 105
298.2M perl [ ]
93 106
257.6M albula [ ]
94 107
255.5M gerelion [ ]
108
+252.3M bowtie2 [ ]
95 109
251.1M simple [ ]
110
+246.8M 3dna [ ]
96 111
235.0M lafire [ ]
112
+232.2M hkl [ ]
97 113
225.9M arcimboldo_lite [ ]
98 114
219.0M mifit [ ]
99 115
215.6M apbs [ ]
116
+214.9M raw [ ]
100 117
210.9M openbabel [ ]
101
-209.4M imagej [ ]
102 118
206.8M solve [ ]
103 119
204.0M cryoemtools [ ]
104 120
192.6M shelx [ ]
105
-190.1M theseus [ ]
106
-188.9M crystfel [ ]
121
+190.4M unio [ ]
107 122
188.6M caver_analyst [ ]
108 123
186.5M avogadro [ ]
109
-183.7M raw [ ]
124
+183.8M theseus [ ]
125
+180.7M sratoolkit [ ]
110 126
179.5M norma [ ]
111 127
179.4M blast [ ]
112 128
177.5M sassie [ ]
113
-175.3M namd [ ]
114 129
170.0M priism [ ]
115
-169.4M jalview [ ]
116 130
162.8M specview [ ]
117
-154.4M mafft [ ]
131
+157.6M infernal [ ]
118 132
153.6M imod_nma [ ]
119 133
153.3M tigris [ ]
120
-152.7M ctffind4 [ ]
121
-147.9M pytom [ ]
134
+145.8M crystfel [ ]
122 135
144.8M tcltk [ ]
123 136
139.8M frodock [ ]
124
-132.1M imosflm [ ]
137
+134.9M pytom [ ]
125 138
131.7M aria [ ]
126 139
131.0M spire [ ]
127 140
127.2M fuda [ ]
128 141
126.7M openmm [ ]
129
-123.1M fasta [ ]
130
-120.5M igv [ ]
131
-117.8M unio [ ]
142
+123.2M xds [ ]
143
+122.4M jalview [ ]
144
+119.2M ctffind4 [ ]
132 145
106.4M gamma [ ]
133 146
102.3M breseq [ ]
134 147
100.3M imodfit [ ]
135 148
97.4M prospect [ ]
136 149
96.3M sharp [ ]
137
-95.4M xds [ ]
150
+89.6M igv [ ]
138 151
89.6M urox [ ]
139
-88.6M xdsgui [ ]
140 152
86.8M emip [ ]
153
+86.8M plip [ ]
141 154
85.7M wxpython [ ]
142 155
82.9M powerfit [ ]
156
+81.1M mafft [ ]
143 157
79.5M tcoffee [ ]
144 158
79.1M sparky [ ]
145 159
77.3M vmd-xplor [ ]
146
-76.7M gnuplot [ ]
147
-73.3M cara [ ]
148 160
69.7M ghostscript [ ]
161
+69.5M xdsgui [ ]
149 162
68.5M suprim [ ]
150 163
67.0M protomo [ ]
151 164
66.8M globus_connect_personal [ ]
152 165
66.7M rsref [ ]
153
-65.8M eman [ ]
154
-58.4M scatter [ ]
155
-57.1M mosflm [ ]
166
+65.2M gnuplot [ ]
167
+61.5M imosflm [ ]
168
+58.1M vinalc [ ]
156 169
56.7M pdb2pqr [ ]
157 170
55.7M como [ ]
158 171
55.5M gefrealign [ ]
172
+55.3M scatter [ ]
159 173
54.1M auto3dem [ ]
174
+51.9M cara [ ]
160 175
49.7M sculptor [ ]
176
+49.4M fasta [ ]
161 177
48.3M mag_distortion [ ]
162
-47.9M dock [ ]
163 178
47.5M bnp [ ]
164 179
47.4M dps [ ]
165 180
46.4M unblur [ ]
181
+46.2M hole [ ]
166 182
45.6M ultrascan [ ]
167 183
45.4M saxsview [ ]
168 184
44.0M mmtsb [ ]
185
+43.7M mosflm [ ]
169 186
42.1M ruby [ ]
170 187
42.1M gerard [ ]
171 188
41.7M resmap [ ]
172
-40.7M simulaid [ ]
173 189
40.3M refmac [ ]
174 190
40.0M nmrview [ ]
175 191
39.5M staden [ ]
176 192
35.8M mead [ ]
177 193
34.1M graphviz [ ]
194
+33.8M xdrawchem [ ]
178 195
33.0M appion [ ]
179 196
30.7M stamp [ ]
180 197
30.3M pymmlib [ ]
181 198
29.9M profphd [ ]
182 199
29.5M fpocket [ ]
183 200
29.5M eden [ ]
201
+29.2M ringer [ ]
202
+28.5M pdb_extract [ ]
184 203
28.3M procheck [ ]
185
-28.1M ringer [ ]
186 204
27.9M sam [ ]
187 205
27.2M phases [ ]
206
+26.9M samtools [ ]
188 207
26.5M scwrl3 [ ]
189 208
26.1M summovie [ ]
190 209
25.6M miso [ ]
191
-25.3M ctf [ ]
192 210
25.0M rasmol [ ]
193 211
23.2M ihrsr [ ]
212
+22.9M xrayview [ ]
213
+22.8M simulaid [ ]
214
+22.6M eiger2cbf [ ]
194 215
22.1M r2r [ ]
195 216
21.7M nessy [ ]
196 217
21.6M finddqe [ ]
... ...
@@ -200,135 +221,137 @@
200 221
21.3M gwyddion [ ]
201 222
20.1M wattos [ ]
202 223
20.1M rdock [ ]
224
+20.1M mpich [ ]
203 225
19.7M bbhp [ ]
204 226
19.3M concoord [ ]
205
-18.4M hole [ ]
206 227
18.2M clustal [ ]
207 228
18.2M rsref2000 [ ]
208 229
17.7M escet [ ]
209
-17.7M adxv [ ]
210 230
17.6M phylip [ ]
211 231
17.4M cmview [ ]
212 232
17.2M replace [ ]
233
+17.2M ctf [ ]
213 234
17.1M direx [ ]
214 235
17.0M mole [ ]
215 236
16.5M redcat [ ]
237
+16.4M sbgrid_installer [ ]
216 238
16.3M remediator [ ]
217 239
16.2M molmol [ ]
218 240
16.0M mrtailor [ ]
219
-15.5M xdrawchem [ ]
220 241
15.5M dssp [ ]
221 242
15.3M ligplus [ ]
222 243
15.2M knuspr [ ]
223 244
15.2M gautomatch [ ]
224 245
15.0M main [ ]
225
-14.5M situs [ ]
226 246
14.2M promals [ ]
227 247
14.1M xeasy [ ]
228
-13.6M epmr [ ]
229 248
13.4M assemble2 [ ]
230 249
13.4M o [ ]
231 250
13.2M rnamlview [ ]
232 251
13.2M xdsme [ ]
252
+13.2M adxv [ ]
233 253
12.7M povray [ ]
234 254
12.5M pft3dr [ ]
235 255
11.9M phoelix [ ]
236 256
11.7M mcce [ ]
237 257
11.6M modelfree [ ]
258
+11.5M situs [ ]
259
+11.4M tensor [ ]
238 260
11.4M particle [ ]
239 261
11.4M finchtv [ ]
240
-11.3M tensor [ ]
241
-10.8M samtools [ ]
242 262
10.7M frealix [ ]
243 263
10.5M hydropro [ ]
244 264
10.5M dyndom3d [ ]
245 265
10.0M x3d [ ]
246
-9.9M espript [ ]
247
-9.9M raster3d [ ]
248
-9.3M embfactor [ ]
249
-9.3M entangle [ ]
250
-9.0M netblast [ ]
251
-8.9M bcftools [ ]
252
-8.8M isthms [ ]
253
-8.5M amps [ ]
254
-8.3M rnastructure [ ]
255
-7.9M elves [ ]
256
-7.3M spdbv [ ]
257
-7.0M module [ ]
258
-6.8M electra [ ]
259
-6.2M pgplot [ ]
260
-6.1M motioncor2 [ ]
261
-6.0M a2ps [ ]
262
-5.9M aqua [ ]
263
-5.6M xv [ ]
264
-5.6M nucplot [ ]
265
-5.6M somore [ ]
266
-5.2M delphi [ ]
267
-5.1M grace [ ]
268
-5.0M veda [ ]
269
-4.6M plotutils [ ]
270
-4.4M weblogo [ ]
271
-4.3M curvesplus [ ]
272
-4.2M xdsi [ ]
273
-4.2M dino [ ]
274
-4.2M timescapes [ ]
275
-4.1M zdock [ ]
276
-4.0M vina [ ]
277
-3.8M solvate [ ]
278
-3.6M nedit [ ]
279
-3.6M ace2 [ ]
280
-3.6M xdsstat [ ]
281
-3.3M ssaha2 [ ]
282
-3.3M mmc [ ]
283
-3.2M h5toxds [ ]
284
-3.2M dyndom [ ]
285
-3.1M scc [ ]
286
-3.1M pdbstat [ ]
287
-3.1M superfold [ ]
288
-2.7M qushape [ ]
289
-2.6M signature [ ]
290
-2.6M aline [ ]
291
-2.5M alscript [ ]
292
-2.5M mammoth-mult [ ]
293
-2.5M primer3 [ ]
294
-2.4M tiltpicker [ ]
295
-2.3M dssr [ ]
296
-2.1M dogpicker [ ]
297
-2.1M bfactor [ ]
298
-2.0M hbplus [ ]
299
-2.0M surfv [ ]
300
-2.0M plotmtv [ ]
301
-2.0M pales [ ]
302
-1.9M quilt [ ]
303
-1.9M diffmap [ ]
304
-1.8M crop [ ]
305
-1.8M pdbfixer [ ]
306
-1.8M xdscc12 [ ]
307
-1.7M bin2mrc [ ]
308
-1.7M rnaview [ ]
309
-1.6M best [ ]
310
-1.6M molscript [ ]
311
-1.5M wasp [ ]
312
-1.5M xds-viewer [ ]
313
-1.5M madbend [ ]
314
-1.4M curves [ ]
315
-1.4M xrayview [ ]
316
-1.4M reduce [ ]
317
-1.3M autodock [ ]
318
-1.3M probe [ ]
319
-1.3M randomize [ ]
320
-1.2M untangle [ ]
321
-1.2M raspnmr [ ]
322
-1.2M cpmgfit [ ]
323
-1.0M muscle [ ]
266
+ 9.9M espript [ ]
267
+ 9.9M raster3d [ ]
268
+ 9.3M embfactor [ ]
269
+ 9.3M entangle [ ]
270
+ 9.2M bioptools [ ]
271
+ 9.0M netblast [ ]
272
+ 8.9M bcftools [ ]
273
+ 8.8M isthms [ ]
274
+ 8.5M amps [ ]
275
+ 8.5M epmr [ ]
276
+ 8.4M rnastructure [ ]
277
+ 7.9M elves [ ]
278
+ 7.3M spdbv [ ]
279
+ 7.0M module [ ]
280
+ 6.8M electra [ ]
281
+ 6.2M pgplot [ ]
282
+ 6.0M a2ps [ ]
283
+ 5.9M aqua [ ]
284
+ 5.6M xv [ ]
285
+ 5.6M nucplot [ ]
286
+ 5.6M somore [ ]
287
+ 5.4M grace [ ]
288
+ 5.3M motioncor2 [ ]
289
+ 5.2M delphi [ ]
290
+ 5.2M xdsapp [ ]
291
+ 5.0M veda [ ]
292
+ 4.6M plotutils [ ]
293
+ 4.4M weblogo [ ]
294
+ 4.3M curvesplus [ ]
295
+ 4.2M xdsi [ ]
296
+ 4.2M dino [ ]
297
+ 4.2M timescapes [ ]
298
+ 4.1M zdock [ ]
299
+ 4.0M vina [ ]
300
+ 3.8M solvate [ ]
301
+ 3.6M nedit [ ]
302
+ 3.6M ace2 [ ]
303
+ 3.6M xdsstat [ ]
304
+ 3.3M ssaha2 [ ]
305
+ 3.3M mmc [ ]
306
+ 3.2M h5toxds [ ]
307
+ 3.2M dyndom [ ]
308
+ 3.2M xdscc12 [ ]
309
+ 3.1M scc [ ]
310
+ 3.1M pdbstat [ ]
311
+ 3.1M superfold [ ]
312
+ 2.7M qushape [ ]
313
+ 2.6M signature [ ]
314
+ 2.6M aline [ ]
315
+ 2.5M alscript [ ]
316
+ 2.5M mammoth-mult [ ]
317
+ 2.5M primer3 [ ]
318
+ 2.4M tiltpicker [ ]
319
+ 2.4M dssr [ ]
320
+ 2.1M dogpicker [ ]
321
+ 2.1M bfactor [ ]
322
+ 2.0M hbplus [ ]
323
+ 2.0M surfv [ ]
324
+ 2.0M plotmtv [ ]
325
+ 2.0M pales [ ]
326
+ 1.9M quilt [ ]
327
+ 1.9M diffmap [ ]
328
+ 1.8M crop [ ]
329
+ 1.8M pdbfixer [ ]
330
+ 1.7M bin2mrc [ ]
331
+ 1.7M rnaview [ ]
332
+ 1.6M best [ ]
333
+ 1.6M molscript [ ]
334
+ 1.5M wasp [ ]
335
+ 1.5M xds-viewer [ ]
336
+ 1.5M madbend [ ]
337
+ 1.4M curves [ ]
338
+ 1.4M reduce [ ]
339
+ 1.3M autodock [ ]
340
+ 1.3M probe [ ]
341
+ 1.3M randomize [ ]
342
+ 1.2M untangle [ ]
343
+ 1.2M raspnmr [ ]
344
+ 1.2M cpmgfit [ ]
345
+ 1.0M muscle [ ]
346
+995.9K hkl2map [ ]
324 347
992.2K surfnet [ ]
325 348
990.8K pdb-care [ ]
326
-926.8K hkl2map [ ]
327 349
911.1K rmerge [ ]
328 350
895.0K ligplot [ ]
329 351
891.9K naccess [ ]
330 352
821.0K hydronmr [ ]
331 353
738.2K dowser [ ]
354
+648.1K rnaframework [ ]
332 355
641.8K bobscript [ ]
333 356
635.8K rmeasure [ ]
334 357
582.8K molphy [ ]
... ...
@@ -348,191 +371,208 @@
348 371
76.0K surfrace [ ]
349 372
63.9K fastmodelfree [ ]
350 373
23.7K pipe2xeasy [ ]
351
-2.3K clustal-omega [ ]
352
- 109 pandas [ ]
353
- 108 numpy [ ]
354
- 107 pysam [ ]
355
- 106 pytz [ ]
356
- 95 rcrane [ ]
357
- 85 ccpnmr-chembuild [ ]
358
- 82 sparx [ ]
359
- 74 biopython [ ]
360
- 72 ipython [ ]
361
- 70 scipy [ ]
362
- 61 ebseq [ ]
363
- 34 bioperl [ ]
374
+ 2.3K clustal-omega [ ]
375
+ 109 pandas [ ]
376
+ 108 numpy [ ]
377
+ 107 pysam [ ]
378
+ 106 pytz [ ]
379
+ 95 rcrane [ ]
380
+ 85 ccpnmr-chembuild [ ]
381
+ 82 sparx [ ]
382
+ 77 mdanalysis [ ]
383
+ 74 biopython [ ]
384
+ 73 neggia [ ]
385
+ 72 ipython [ ]
386
+ 70 scipy [ ]
387
+ 61 ebseq [ ]
388
+ 34 bioperl [ ]
364 389
```
365 390
366 391
### i386-mac ( 189.2G )
367 392
368 393
```
369
-25.8G schrodinger [+++++++++++++++++++++++++++++++++++++]
370
-13.0G rosetta [++++++++++++++++++ ]
371
-11.4G phenix [++++++++++++++++ ]
372
-9.6G pomona [+++++++++++++ ]
373
-9.2G ccp4 [+++++++++++++ ]
374
-8.8G pyrosetta [++++++++++++ ]
375
-6.0G ambertools [++++++++ ]
376
-5.3G orca [+++++++ ]
377
-4.9G spring [+++++++ ]
378
-4.1G ilastik [+++++ ]
379
-3.8G anaconda [+++++ ]
380
-3.8G spider [+++++ ]
381
-3.5G python [+++++ ]
382
-3.4G csrosetta [++++ ]
383
-3.3G dials [++++ ]
384
-3.3G pymol [++++ ]
385
-3.2G molprobity [++++ ]
386
-3.1G xmipp [++++ ]
387
-2.8G nmrpipe [++++ ]
388
-2.7G blastplus [+++ ]
389
-2.6G system [+++ ]
390
-2.5G ccp4mg [+++ ]
391
-2.5G atsas [+++ ]
392
-2.4G divcon [+++ ]
393
-2.4G xplor [+++ ]
394
-2.3G chimera [+++ ]
395
-2.0G eman2 [++ ]
396
-1.6G mageckvispr [++ ]
397
-1.6G relax [++ ]
398
-1.5G ccpnmr [++ ]
399
-1.4G geneious [+ ]
400
-1.2G r [+ ]
401
-1.2G arp_warp [+ ]
402
-1.2G coot [+ ]
403
-1.1G cns [+ ]
404
-1.1G whatcheck [+ ]
394
+34.6G schrodinger [+++++++++++++++++++++++++++++++++++++]
395
+20.5G rosetta [+++++++++++++++++++++ ]
396
+12.6G phenix [+++++++++++++ ]
397
+ 9.6G pomona [++++++++++ ]
398
+ 8.8G pyrosetta [+++++++++ ]
399
+ 7.6G ccp4 [++++++++ ]
400
+ 5.4G ambertools [+++++ ]
401
+ 5.3G orca [+++++ ]
402
+ 5.2G ilastik [+++++ ]
403
+ 4.9G dials [+++++ ]
404
+ 4.9G spring [+++++ ]
405
+ 4.2G texlive [++++ ]
406
+ 4.0G eman2 [++++ ]
407
+ 3.8G anaconda [++++ ]
408
+ 3.8G spider [++++ ]
409
+ 3.5G python [+++ ]
410
+ 3.5G atsas [+++ ]
411
+ 3.4G csrosetta [+++ ]
412
+ 3.2G molprobity [+++ ]
413
+ 3.1G xmipp [+++ ]
414
+ 2.8G nmrpipe [++ ]
415
+ 2.5G ccp4mg [++ ]
416
+ 2.4G divcon [++ ]
417
+ 2.4G xplor [++ ]
418
+ 2.1G relax [++ ]
419
+ 2.0G chimera [++ ]
420
+ 1.9G geneious [++ ]
421
+ 1.6G mageckvispr [+ ]
422
+ 1.2G r [+ ]
423
+ 1.2G coot [+ ]
424
+ 1.1G pymol [+ ]
425
+ 1.1G cns [+ ]
426
+ 1.1G nmrfam-sparky [+ ]
427
+ 1.1G whatcheck [+ ]
428
+ 1.1G qt [+ ]
429
+ 1.1G blastplus [+ ]
430
+ 1.0G ccpnmr [+ ]
431
+ 1.0G arp_warp [+ ]
405 432
1003.1M imp [+ ]
406 433
990.7M shiftx2 [+ ]
407
-906.3M iplt [+ ]
408
-888.3M 2dx [+ ]
409
-862.8M mgltools [+ ]
410
-843.5M emboss [+ ]
411
-805.5M rcsbtools [+ ]
412
-802.7M em2em [+ ]
413
-784.7M buster [+ ]
434
+906.3M iplt [ ]
435
+899.1M system [ ]
436
+888.3M 2dx [ ]
437
+843.5M emboss [ ]
438
+805.5M rcsbtools [ ]
439
+797.0M em2em [ ]
440
+734.2M relion [ ]
414 441
705.1M specview [ ]
442
+694.7M focus [ ]
415 443
693.3M rstudio [ ]
416
-565.4M frealign [ ]
417
-555.9M modeller [ ]
418
-552.2M bsoft [ ]
419
-534.1M imod [ ]
420
-503.0M blast [ ]
444
+659.5M buster [ ]
445
+629.9M simple [ ]
446
+623.3M imod [ ]
447
+523.1M chimerax [ ]
421 448
499.2M ultrascan3 [ ]
422
-496.2M 3dna [ ]
423 449
483.4M solve [ ]
424 450
481.2M gwyddion [ ]
425
-473.0M autoproc [ ]
426 451
472.7M caver [ ]
427
-466.7M gromacs [ ]
452
+467.8M icmbrowser [ ]
453
+465.2M mgltools [ ]
428 454
463.5M fiji [ ]
429 455
455.4M gorgon [ ]
456
+453.6M raw [ ]
430 457
452.4M balbes [ ]
431
-437.3M relion [ ]
458
+433.6M bsoft [ ]
459
+433.3M autoproc [ ]
460
+431.0M frealign [ ]
432 461
428.3M dynamo [ ]
462
+410.1M blast [ ]
433 463
395.1M talosn [ ]
464
+384.0M modeller [ ]
434 465
379.9M pymmlib [ ]
435
-372.0M hkl [ ]
466
+361.2M theseus [ ]
436 467
353.8M dssp [ ]
437
-335.7M imosflm [ ]
438
-330.9M qt [ ]
439 468
323.8M mrc [ ]
440 469
305.2M ultrascan [ ]
441
-296.9M simple [ ]
470
+293.0M mgltools2 [ ]
442 471
274.7M albula [ ]
443 472
273.7M avogadro [ ]
444
-254.0M imagemagick [ ]
445
-236.1M shelx-2013 [ ]
473
+247.0M 3dna [ ]
474
+234.3M cp2k [ ]
475
+227.9M gromacs [ ]
446 476
227.4M lafire [ ]
477
+216.4M unio [ ]
447 478
213.8M eman [ ]
448 479
205.7M vmd [ ]
449
-204.7M mafft [ ]
480
+201.3M hkl [ ]
450 481
200.6M caver_analyst [ ]
482
+197.5M dock [ ]
451 483
196.0M cryoemtools [ ]
452
-193.6M theseus [ ]
453
-193.0M raw [ ]
484
+191.2M mono [ ]
454 485
187.9M spdbv [ ]
455 486
186.5M perl [ ]
487
+185.1M imagej [ ]
456 488
182.9M dtrek_free [ ]
457
-171.6M rnastructure [ ]
489
+171.7M rnastructure [ ]
458 490
170.4M auto3dem [ ]
459 491
164.8M apbs [ ]
460 492
164.6M spire [ ]
493
+162.3M shelx-2013 [ ]
494
+161.6M sratoolkit [ ]
461 495
158.4M tcltk [ ]
496
+153.7M imosflm [ ]
462 497
151.4M igv [ ]
463 498
146.0M tigris [ ]
464 499
145.3M sparky [ ]
465
-143.8M unio [ ]
466 500
131.3M shelx [ ]
467 501
131.1M nmrview [ ]
468 502
129.6M priism [ ]
469
-125.6M crystfel [ ]
470
-123.9M mosflm [ ]
503
+127.4M imagemagick [ ]
504
+126.8M mafft [ ]
471 505
120.8M openmm [ ]
472 506
120.3M refmac [ ]
473
-119.9M jalview [ ]
507
+114.5M xds [ ]
474 508
111.5M breseq [ ]
475 509
111.0M sharp [ ]
476 510
107.2M clustal [ ]
477
-105.5M xdsgui [ ]
478
-104.8M dock [ ]
479
-102.2M fasta [ ]
480 511
102.0M ghostscript [ ]
481 512
100.9M gamma [ ]
513
+98.9M mosflm [ ]
514
+96.3M crystfel [ ]
515
+94.3M bowtie2 [ ]
482 516
91.5M tcoffee [ ]
483
-90.2M xds [ ]
484 517
90.0M graphviz [ ]
518
+87.6M infernal [ ]
519
+83.1M xdsgui [ ]
485 520
82.4M powerfit [ ]
521
+78.2M jalview [ ]
486 522
77.2M vmd-xplor [ ]
487 523
74.3M wxpython [ ]
524
+69.4M pytom [ ]
488 525
63.3M raspnmr [ ]
489 526
63.1M gerard [ ]
490 527
62.2M bbhp [ ]
491 528
58.8M sculptor [ ]
492
-58.5M pytom [ ]
493
-58.4M scatter [ ]
529
+56.6M xrayview [ ]
494 530
56.0M como [ ]
495
-55.1M ctffind4 [ ]
531
+55.3M scatter [ ]
496 532
54.8M emip [ ]
533
+53.5M sbgrid_installer [ ]
497 534
53.4M namd [ ]
498 535
51.4M finchtv [ ]
499 536
50.6M pdb2pqr [ ]
500 537
49.8M openbabel [ ]
501 538
48.5M openmotif [ ]
502 539
46.8M staden [ ]
540
+46.7M fasta [ ]
503 541
44.2M mmtsb [ ]
504 542
43.6M suprim [ ]
505 543
43.5M lib [ ]
506 544
42.9M ligplot [ ]
545
+39.5M ctffind4 [ ]
507 546
37.8M phoelix [ ]
508
-37.4M simulaid [ ]
509 547
35.6M profphd [ ]
510 548
34.8M haddock [ ]
511 549
34.3M main [ ]
512
-33.7M adxv [ ]
513 550
33.4M sam [ ]
514
-32.9M xrayview [ ]
515 551
31.5M cara [ ]
516 552
31.4M aria [ ]
517 553
31.3M scwrl4 [ ]
518 554
31.0M knuspr [ ]
519
-30.5M situs [ ]
555
+30.3M o [ ]
556
+29.7M mpich [ ]
520 557
29.2M stamp [ ]
521 558
29.2M ruby [ ]
522 559
29.1M pdb_redo [ ]
560
+29.0M hole [ ]
561
+28.9M pdb_extract [ ]
523 562
28.1M ringer [ ]
524 563
27.0M fpocket [ ]
564
+26.4M simulaid [ ]
525 565
26.2M pft3dr [ ]
526
-25.8M o [ ]
527 566
25.5M globus_connect_personal [ ]
528 567
24.5M imodfit [ ]
529 568
24.4M phylip [ ]
530 569
24.0M raster3d [ ]
531
-22.6M gnuplot [ ]
570
+22.8M adxv [ ]
532 571
21.9M molmol [ ]
572
+21.0M eiger2cbf [ ]
533 573
20.5M appion [ ]
534 574
20.4M ace2 [ ]
535
-19.7M imagej [ ]
575
+20.1M situs [ ]
536 576
19.6M direx [ ]
537 577
19.2M promals [ ]
538 578
18.9M resmap [ ]
... ...
@@ -540,7 +580,6 @@
540 580
18.3M ligplus [ ]
541 581
18.3M miso [ ]
542 582
17.9M xds-viewer [ ]
543
-17.9M ctf [ ]
544 583
17.4M cmview [ ]
545 584
17.1M mole [ ]
546 585
16.9M redcat [ ]
... ...
@@ -549,6 +588,7 @@
549 588
16.3M remediator [ ]
550 589
15.5M mrtailor [ ]
551 590
15.4M replace [ ]
591
+13.6M gnuplot [ ]
552 592
13.4M assemble2 [ ]
553 593
13.3M netblast [ ]
554 594
13.2M xdsme [ ]
... ...
@@ -556,91 +596,92 @@
556 596
12.8M povray [ ]
557 597
12.7M mcce [ ]
558 598
12.7M reduce [ ]
559
-12.5M mpich [ ]
560
-11.2M hole [ ]
561 599
11.2M tensor [ ]
562 600
10.9M espript [ ]
563 601
10.9M nessy [ ]
602
+10.6M samtools [ ]
564 603
10.6M dino [ ]
565 604
10.5M dyndom3d [ ]
566 605
10.4M electra [ ]
567 606
10.4M rasmol [ ]
568 607
10.0M mead [ ]
569
-9.5M openmpi [ ]
570
-9.3M entangle [ ]
571
-9.3M phases [ ]
572
-8.2M surfnet [ ]
573
-8.1M pgplot [ ]
574
-8.0M procheck [ ]
575
-7.9M elves [ ]
576
-7.9M particle [ ]
577
-7.3M zdock [ ]
578
-6.4M grace [ ]
579
-6.3M somore [ ]
580
-5.9M nucplot [ ]
581
-5.7M xv [ ]
582
-5.5M amps [ ]
583
-5.4M module [ ]
584
-5.3M nedit [ ]
585
-4.9M vina [ ]
586
-4.8M modelfree [ ]
587
-4.8M mmc [ ]
588
-4.4M a2ps [ ]
589
-4.4M epmr [ ]
590
-4.4M samtools [ ]
591
-4.4M signature [ ]
592
-4.3M aqua [ ]
593
-4.2M xdsi [ ]
594
-3.9M weblogo [ ]
595
-3.9M isthms [ ]
596
-3.8M delphi [ ]
597
-3.8M solvate [ ]
598
-3.7M plotutils [ ]
599
-3.7M bobscript [ ]
600
-3.6M autodock [ ]
601
-3.4M ssaha2 [ ]
602
-3.3M curvesplus [ ]
603
-3.2M pdb-care [ ]
604
-3.2M fftw [ ]
605
-3.1M bcftools [ ]
606
-3.0M aline [ ]
607
-3.0M pales [ ]
608
-3.0M embfactor [ ]
609
-2.8M quilt [ ]
610
-2.7M qushape [ ]
611
-2.5M dssr [ ]
612
-2.4M saxsview [ ]
613
-2.4M profit [ ]
614
-2.3M rnaview [ ]
615
-2.3M diffmap [ ]
616
-2.3M dyndom [ ]
617
-2.2M mammoth-mult [ ]
618
-2.2M plotmtv [ ]
619
-2.2M bfactor [ ]
620
-2.1M concoord [ ]
621
-1.9M xdsstat [ ]
622
-1.9M scc [ ]
623
-1.8M x3d [ ]
624
-1.8M hbplus [ ]
625
-1.7M molphy [ ]
626
-1.6M curves [ ]
627
-1.6M probe [ ]
628
-1.5M primer3 [ ]
629
-1.4M rmerge [ ]
630
-1.2M cpmgfit [ ]
631
-1.1M rmeasure [ ]
632
-1.1M molscript [ ]
633
-1.0M timescapes [ ]
634
-1.0M muscle [ ]
635
-878.2K hkl2map [ ]
608
+ 9.5M openmpi [ ]
609
+ 9.3M entangle [ ]
610
+ 9.3M phases [ ]
611
+ 8.4M ctf [ ]
612
+ 8.2M surfnet [ ]
613
+ 8.1M pgplot [ ]
614
+ 8.0M procheck [ ]
615
+ 7.9M elves [ ]
616
+ 7.9M particle [ ]
617
+ 7.3M zdock [ ]
618
+ 6.5M bioptools [ ]
619
+ 6.4M grace [ ]
620
+ 6.3M somore [ ]
621
+ 5.9M nucplot [ ]
622
+ 5.7M xv [ ]
623
+ 5.5M amps [ ]
624
+ 5.3M nedit [ ]
625
+ 4.9M vina [ ]
626
+ 4.8M modelfree [ ]
627
+ 4.8M mmc [ ]
628
+ 4.7M xdsapp [ ]
629
+ 4.4M a2ps [ ]
630
+ 4.4M signature [ ]
631
+ 4.3M aqua [ ]
632
+ 4.2M xdsi [ ]
633
+ 3.9M weblogo [ ]
634
+ 3.9M isthms [ ]
635
+ 3.8M delphi [ ]
636
+ 3.8M solvate [ ]
637
+ 3.7M plotutils [ ]
638
+ 3.7M bobscript [ ]
639
+ 3.6M autodock [ ]
640
+ 3.4M ssaha2 [ ]
641
+ 3.3M curvesplus [ ]
642
+ 3.2M pdb-care [ ]
643
+ 3.2M fftw [ ]
644
+ 3.1M bcftools [ ]
645
+ 3.0M aline [ ]
646
+ 3.0M pales [ ]
647
+ 3.0M embfactor [ ]
648
+ 2.8M quilt [ ]
649
+ 2.7M qushape [ ]
650
+ 2.6M dssr [ ]
651
+ 2.4M saxsview [ ]
652
+ 2.4M profit [ ]
653
+ 2.3M rnaview [ ]
654
+ 2.3M diffmap [ ]
655
+ 2.3M dyndom [ ]
656
+ 2.2M mammoth-mult [ ]
657
+ 2.2M plotmtv [ ]
658
+ 2.2M bfactor [ ]
659
+ 2.1M concoord [ ]
660
+ 1.9M xdsstat [ ]
661
+ 1.9M scc [ ]
662
+ 1.8M x3d [ ]
663
+ 1.8M hbplus [ ]
664
+ 1.7M epmr [ ]
665
+ 1.7M molphy [ ]
666
+ 1.6M curves [ ]
667
+ 1.6M probe [ ]
668
+ 1.5M primer3 [ ]
669
+ 1.4M rmerge [ ]
670
+ 1.4M xdscc12 [ ]
671
+ 1.2M cpmgfit [ ]
672
+ 1.1M rmeasure [ ]
673
+ 1.1M molscript [ ]
674
+ 1.0M timescapes [ ]
675
+ 1.0M muscle [ ]
636 676
819.8K best [ ]
637
-723.0K xdscc12 [ ]
677
+808.5K hkl2map [ ]
638 678
683.6K wasp [ ]
639 679
622.1K dowser [ ]
640 680
597.1K pdbfixer [ ]
641 681
527.6K superfold [ ]
642 682
522.6K qpack [ ]
643 683
483.4K shapemapper [ ]
684
+463.4K rnaframework [ ]
644 685
420.8K surfv [ ]
645 686
416.6K samviewer [ ]
646 687
396.6K probcons [ ]
... ...
@@ -657,51 +698,53 @@
657 698
87.5K surfrace [ ]
658 699
63.9K fastmodelfree [ ]
659 700
30.6K pipe2xeasy [ ]
660
- 102 cython [ ]
661
- 100 pandas [ ]
662
- 99 numpy [ ]
663
- 81 ccpnmr-chembuild [ ]
664
- 74 sparx [ ]
665
- 73 rcrane [ ]
666
- 68 biopython [ ]
667
- 68 ipython [ ]
668
- 67 pysam [ ]
669
- 67 scipy [ ]
670
- 65 bioperl [ ]
671
- 65 pytz [ ]
672
- 57 ebseq [ ]
701
+ 102 cython [ ]
702
+ 100 pandas [ ]
703
+ 99 numpy [ ]
704
+ 81 ccpnmr-chembuild [ ]
705
+ 74 sparx [ ]
706
+ 73 mdanalysis [ ]
707
+ 73 rcrane [ ]
708
+ 69 neggia [ ]
709
+ 68 biopython [ ]
710
+ 68 ipython [ ]
711
+ 67 pysam [ ]
712
+ 67 scipy [ ]
713
+ 65 bioperl [ ]
714
+ 65 pytz [ ]
715
+ 57 ebseq [ ]
673 716
```
674 717
675 718
### share ( 18.0G )
676 719
677 720
```
678
-7.7G balbes [++++++++++++++++++++++++++++++++++++++++++++++++++++++]
679
-5.8G rosetta [++++++++++++++++++++++++++++++++++++++++ ]
680
-990.7M pymol [++++++ ]
681
-714.7M gerard [++++ ]
682
-569.8M spider [+++ ]
683
-449.0M ligplus [+++ ]
684
-418.7M emip [++ ]
685
-330.8M refmac [++ ]
686
-254.1M o [+ ]
687
-227.0M coot [+ ]
688
-216.9M caver [+ ]
721
+5.1G balbes [++++++++++++++++++++++++++++++++++++++++++++++++++++++]
722
+990.7M pymol [++++++++++ ]
723
+714.7M gerard [+++++++ ]
724
+569.8M spider [+++++ ]
725
+449.0M ligplus [++++ ]
726
+418.7M emip [++++ ]
727
+330.8M refmac [+++ ]
728
+260.9M o [++ ]
729
+227.0M coot [++ ]
730
+216.9M caver [++ ]
689 731
192.7M whatcheck [+ ]
690
-119.6M hkl [ ]
691 732
78.0M reduce [ ]
692
-46.8M imagej [ ]
733
+25.1M imagej [ ]
693 734
23.1M fiji [ ]
694 735
8.4M system [ ]
695 736
6.1M ghostscript [ ]
696 737
1.8M blast [ ]
697 738
368.6K simulaid [ ]
698
-310.6K sbgrid [ ]
739
+285.3K sbgrid [ ]
699 740
258.5K adxv [ ]
700 741
198.9K emboss [ ]
701
-189.3K capsules [ ]
742
+196.8K capsules [ ]
702 743
132.6K xds [ ]
703 744
128.9K sam [ ]
704
-100.1K bin [ ]
745
+104.6K bin [ ]
746
+67.7K grids [ ]
705 747
49.0K cns [ ]
706 748
50 pyrosetta [ ]
749
+ 8 rosetta [ ]
707 750
```