_Sidebar.md
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![SBGrid](images/sbgrid_small_logo.gif) **[SBGrid Wiki](Home)**
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3 3
Support for Users
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-* [Software Help](help)
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-* [New Software Requests](help)
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+* [Getting Started with SBGrid](getting_started)
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+* [Software Help and Software Requests](help)
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* [Supported Operating Systems](operatingsystems)
7 7
* [Overriding Default Software Versions](versions)
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* [Install The Software On Your Laptop](laptopinstall)
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@@ -26,4 +26,3 @@ Hardware Support Notes
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27 27
WSMR
28 28
* [Data Processing After WSMR](wsmr-worked)
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-
getting_started.md
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+## Getting Started
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+
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+### Using the SBGrid software collection
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+The SBGrid software collection can be found installed at **/programs**.
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+
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+Bash users should initialize the SBGrid environment using :
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+
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+ source /programs/sbgrid.shrc
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+
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+Tcsh users should initialize the SBGrid environment with :
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+
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+ source /programs/sbgrid.cshrc
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+
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+On initialization, you should see the SBGrid welcome message
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+
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+![SBGrid](images/terminal1.png)
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+
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+### Making the configuration automatic
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+
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+To setup your terminal to automatically load the SBGrid environment, add the following to your configuration file:
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+
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+For Bash, in **~/.bashrc**, add :
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+
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+ if [ -f /programs/sbgrid.shrc ] ; then
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+ source /programs/sbgrid.cshrc
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+ fi
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+
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+For tcsh, in **~/.tcshrc** or **~/.cshrc**, add :
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+
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+ if ( -e /programs/sbgrid.cshrc) then
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+ source /programs/sbgrid.cshrc
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+ endif
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+
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+### Setting an alias
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+
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+If you would prefer to load the SBGrid environment on demand and not have to type the command above, you can set an alias to a shorter command of your choosing.
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+
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+For example, for bash in ~/.bashrc :
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+
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+ alias sbg='source /programs/sbgrid.shrc'
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+
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+For tcsh in ~/.tcshrc, this would be
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+
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+ alias sbg 'source /programs/sbgrid.cshrc'
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+
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+Questions or problems? Please email **bugs@sbgrid.org**
images/terminal1.png
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schrodinger_remote.md
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+## Launching remote schrodinger jobs from maestro
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+
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+Schrodinger's Maestro GUI supports running jobs on remote systems to take advantage of systems with more computational resources.
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+
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+Setting this up requires 3 things:
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+1. Setting up ssh keys to the remote system
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+2. Configuring schrodinger.hosts for the system
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+3. Launching the jobs on the appropriate system.
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+
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+Configuring schrodinger.hosts
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+The schrodinger.hosts file should be located (or created) in your home directory; in $HOME/.schrodinger.
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+
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+An example schrodinger.hosts file:
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+
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+
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+ name: localhost
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+ tmpdir: /tmp/
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+
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+ # remote system
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+ name: sbgrid-zorin
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+ user: my_remote_username
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+ host: zorin.sbgrid.org
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+ tmpdir: /tmp
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+ processors: 32
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+
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+## Launching jobs on the remote system
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+
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+To launch a job on a remote system, the name under "Host" should match the name line for the remote system in your schrodinger.hosts.
usage/_Sidebar.md
... ...
@@ -1,8 +1,8 @@
1 1
![SBGrid](images/sbgrid_small_logo.gif) **[SBGrid Wiki](Home)**
2 2
3 3
Support for Users
4
-* [Software Help](help)
5
-* [New Software Requests](help)
4
+* [Getting Started with SBGrid](getting_started)
5
+* [Software Help and Software Requests](help)
6 6
* [Supported Operating Systems](operatingsystems)
7 7
* [Overriding Default Software Versions](versions)
8 8
* [Install The Software On Your Laptop](laptopinstall)
... ...
@@ -26,4 +26,3 @@ Hardware Support Notes
26 26
27 27
WSMR
28 28
* [Data Processing After WSMR](wsmr-worked)
29
-
usage/getting_started.md
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@@ -0,0 +1,46 @@
1
+## Getting Started
2
+
3
+### Using the SBGrid software collection
4
+The SBGrid software collection can be found installed at **/programs**.
5
+
6
+Bash users should initialize the SBGrid environment using :
7
+
8
+ source /programs/sbgrid.shrc
9
+
10
+Tcsh users should initialize the SBGrid environment with :
11
+
12
+ source /programs/sbgrid.cshrc
13
+
14
+On initialization, you should see the SBGrid welcome message
15
+
16
+![SBGrid](images/terminal1.png)
17
+
18
+### Making the configuration automatic
19
+
20
+To setup your terminal to automatically load the SBGrid environment, add the following to your configuration file:
21
+
22
+For Bash, in **~/.bashrc**, add :
23
+
24
+ if [ -f /programs/sbgrid.shrc ] ; then
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+ source /programs/sbgrid.cshrc
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+ fi
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+
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+For tcsh, in **~/.tcshrc** or **~/.cshrc**, add :
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+
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+ if ( -e /programs/sbgrid.cshrc) then
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+ source /programs/sbgrid.cshrc
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+ endif
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+
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+### Setting an alias
35
+
36
+If you would prefer to load the SBGrid environment on demand and not have to type the command above, you can set an alias to a shorter command of your choosing.
37
+
38
+For example, for bash in ~/.bashrc :
39
+
40
+ alias sbg='source /programs/sbgrid.shrc'
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+
42
+For tcsh in ~/.tcshrc, this would be
43
+
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+ alias sbg 'source /programs/sbgrid.cshrc'
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+
46
+Questions or problems? Please email **bugs@sbgrid.org**
usage/images/terminal1.png
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