4ea058849e6f8669e67bb92ae17d7105bc3a5287
sbgrid-cli-admin.md
... | ... | @@ -26,6 +26,7 @@ The sudo requirement can be skipped with the `--target` and `--no-link flags` (d |
26 | 26 | ``` |
27 | 27 | echo 'sbgrid ALL=(ALL) ALL' > /etc/sudoers.d/sbgrid |
28 | 28 | ``` |
29 | +This is only required for activation and can be removed anytime after the installation is activated. |
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29 | 30 | |
30 | 31 | 2. Log in as this 'sbgrid' user |
31 | 32 | |
... | ... | @@ -53,7 +54,7 @@ tar -zxvf sbgrid-cli_2.2.29-linux.tar.gz && chmod +x sbgrid-cli |
53 | 54 | |
54 | 55 | 5. Activate the installation |
55 | 56 | |
56 | -Activating the installation will create the required installation paths and directories for installing the software. This is the point where alternate installation paths can be used. Please see XXXX for more info. |
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57 | +Activating the installation will create the required installation paths and directories for installing the software. This is the point where alternate installation paths can be used. Please see [https://sbgrid.org//wiki/sbgrid-cli#activation](https://sbgrid.org//wiki/sbgrid-cli#activation) for more info. |
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57 | 58 | |
58 | 59 | |
59 | 60 | ``` |
... | ... | @@ -69,8 +70,8 @@ where the target path is writable. This option does not require sudo but will re |
69 | 70 | |
70 | 71 | 6. Run the installation using `./sbgrid-cli admin` |
71 | 72 | |
72 | -7. Add to crontab for periodic updates |
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73 | - |
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73 | +7. Add to crontab for periodic updates using `./sbgrid-cli crontab` |
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74 | + |
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74 | 75 | |
75 | 76 | Post-Install Steps: |
76 | 77 | |
... | ... | @@ -83,7 +84,7 @@ Post-Install Steps: |
83 | 84 | 2. Any user that wishes to use SBGrid needs to configure their shell |
84 | 85 | to initialize the SBGrid shell environment: |
85 | 86 | |
86 | - For bash: add `. /programs/sbgrid.shrc` to ~/.bashrc |
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87 | + For bash: add `source /programs/sbgrid.shrc` to ~/.bashrc |
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87 | 88 | For tcsh: add `source /programs/sbgrid.cshrc` to ~/.cshrc |
88 | 89 | |
89 | 90 | 3. Configure your workstations for maximum compatibility: |
sbgrid-cli.md
... | ... | @@ -449,7 +449,7 @@ sbgrid-cli admin --all-versions -j 4 --linux --darwin |
449 | 449 | |
450 | 450 | To automate the process the commands above can be added to the crontab of the 'sbgrid' user account. |
451 | 451 | This can be done with the `sbgrid-cli crontab` command (see below). |
452 | -For example, the line below will check for new versions every 15 minutes. |
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452 | +For example, the crontab configuration line below will check for new versions every 15 minutes. |
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453 | 453 | |
454 | 454 | ``` |
455 | 455 | */15 * * * * /programs/x86_64-linux/sbgrid_installer/latest/sbgrid-cli admin --all-versions -j 4 |
... | ... | @@ -481,7 +481,7 @@ The `sbgrid-cli admin` functionality replaces the legacy *sbgrid-admin* installa |
481 | 481 | |
482 | 482 | Adds a line to the user crontab to configure periodic updates. |
483 | 483 | |
484 | -The default is to check for new titles every 15 minutes: |
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484 | +The default crontab configuration is to check for new titles every 15 minutes: |
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485 | 485 | |
486 | 486 | ``` |
487 | 487 | */15 * * * * /opt/sbgrid/x86_64-linux/sbgrid_installer/latest/sbgrid-cli admin |