4ad369f864b5abf59b6579af4f7ba9d41539abc8
coot.md
... | ... | @@ -14,7 +14,7 @@ If capsules are enabled, the output should be : |
14 | 14 | Active |
15 | 15 | ``` |
16 | 16 | |
17 | -If capsules are InActive, they can be enable with the `sbcap on` command followed by `source /programs/sbgrid.shrc`. |
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17 | +If capsules are InActive, they can be enable with the `sbcap on` command followed by `source /programs/sbgrid.shrc` or `.cshrc` for tcsh users. |
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18 | 18 | |
19 | 19 | |
20 | 20 | ### "Which COOT am I using?" |
... | ... | @@ -34,8 +34,8 @@ $ coot --sbwhich |
34 | 34 | |
35 | 35 | By default we use the CCP4 release of COOT in SBGrid. This version is stable, supported and the same for MacOS and Linux. But it is easy to change. |
36 | 36 | |
37 | -### Next, what titles provide "coot" executables? |
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38 | -SBGrid capsules provide an additional set of flags for all executables, prefixed with `--sbapp:`. For more info see the [documentation for capsules here.](capsules.md) To list all the installed tiles that provide `coot`, use `--sbapp:l` |
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37 | +### What titles provide "coot" executables? |
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38 | +SBGrid capsules provide an additional set of flags for all executables, prefixed with `--sbapp:`. For more info see the [documentation for capsules here.](capsules) To list all the installed tiles that provide `coot`, use `--sbapp:l` |
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39 | 39 | |
40 | 40 | ``` |
41 | 41 | $ coot --sbapp:l |
... | ... | @@ -166,6 +166,6 @@ Binary type: Linux-x86_64-scientific-linux-6.10-python-gtk2 |
166 | 166 | |
167 | 167 | The version of `coot` changes to the version provided by the CCP4 version specified by CCP4_X. |
168 | 168 | |
169 | -For more info, see [capsules](capsules.md), and [version manangement](overrides.md). |
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169 | +For more info, see [capsules](capsules), and [version manangement](overrides). |
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170 | 170 | |
171 | 171 | For questions or to report bugs, please email bugs@sbgrid.org |
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