examples/rosettafold_all_atom.md
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@@ -14,9 +14,10 @@
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#SBATCH --gres=gpu:1
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-# cd /temp_work/ch199734/114504_rosettafoldaa # BCH E3
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-cd /home/jjv16/tickets/114504_rosettafoldaa # O2
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+# Change to project directory - cannot be run from RFAA source directory
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+cd /temp_work/ch199734/114504_rosettafoldaa
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+# Load cuda
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module load cuda/11.2
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# Start SBGrid environment
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@@ -27,8 +28,7 @@ export ROSETTAFOLDAA_X=bf21483
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# Set critical env variables
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export DGLBACKEND=pytorch
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-#export ROSETTAFOLD_DB_PATH=/programs/local/biogrids/rosettafold/ # BCH E3
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-export ROSETTAFOLD_DB_PATH=/n/scratch/users/j//jjv16/rosettafold # O2
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+export ROSETTAFOLD_DB_PATH=/programs/local/biogrids/rosettafold
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export MY_RFAA_DIR=/programs/x86_64-linux/rosettafoldaa/${ROSETTAFOLDAA_X}/RoseTTAFold-All-Atom
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# Call the correct python bundled with RFAA