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sbgrid-relion2017.md
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1 | +## SBGrid RELION 2017 |
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3 | +We will be using RELION and Chimera during the workshop, primarily in Amazon EC2. To access these, you will need a modern web browser and access to WiFi. |
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5 | +You may also want intall these applications on your laptop or desktop. |
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6 | +SBGrid builds on CentOS 6, though these applications should work on any modern Linux distro. |
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7 | + |
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8 | +For Mac, we support 10.9 and higher. Keep in mind that many of the tools we are using are only available for linux. |
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9 | + |
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10 | +### Register for the SBGrid install client |
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11 | +First, set up an account by registering here : [SBGrid registration](https://sbgrid.org/registration/register/) |
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12 | + |
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13 | +### Installation instructions |
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14 | +A GUI version is also available for MacOS / OSX - |
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15 | +[installation instructions can be found here](client_install). |
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16 | +[GUI usage info is here](client_usage). |
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17 | + |
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18 | +For Mac, install RELION and Chimera. |
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19 | + |
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20 | +For Linux, Install RELION, Chimera, GCTF, CTF, and CUDA. |
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21 | + |
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22 | +### Set up the environment |
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23 | +For BASH users: |
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24 | + |
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25 | + source /programs/sbgrid.shrc |
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26 | + |
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27 | +For TCSH users: |
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28 | + |
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29 | + source /programs/sbgrid.cshrc |
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30 | + |
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31 | +Please report any issues to bugs@sbgrid.org, See you next week. |
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32 | + |
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33 | +### Tutorial dataset for the workshop (~4Gb) |
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34 | + |
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35 | +[workshop.tar.gz](https://www.dropbox.com/s/6ra1wwe46rn12ca/workshop.tar.gz?dl=1) |