benchmarking_linux.md
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+# Linux Benchmarking
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+
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+<!-- TOC -->
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+ - [Benchmark Summaries](#bench-summary)
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+ - [Benchmarking Systems](#bench-systems)
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+ - [Benchmarking Datasets](#bench-dataset)
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+
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+<!-- /TOC -->
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+
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+## Benchmark Summaries
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+
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+### Relion 2D classification
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+
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+System | Runtime | Notes
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+______ | _______ | _____
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+Workstation 1 | 712s |
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+Workstation 2 | 398 | 2x GPU
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+GPU Node 1 | 281s | 4x GPU
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+
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+
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+
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+## Benchmarking Systems
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+
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+<!-- pm-linux0 -->
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+### Workstation 1
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+ - 8x Xeon E5-1630 v4
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+ - 128G RAM
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+ - 1x GeForce RTX 2080
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+ - 1 Gb/s network
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+
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+<!-- haumea -->
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+### Workstation 2
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+ - 48x Xeon E5-268W v4
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+ - 128G RAM
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+ - 2x GeForce GTX 1080 Ti
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+ - 10 Gb/s network
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+
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+<!-- sbgrid-gpu1 -->
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+### GPU Node 1
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+ - 64x AMD EPYC 7502
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+ - 256G RAM
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+ - 4x RTX A5000
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+ - 10 Gb/s network
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+
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+#### Notes
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+Core counts determined via "nproc" output, and include hyperthreading where enabled.
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+
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+
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+
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+## Benchmarking Datasets
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+
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+### Dataset 1
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+Plasmodium ribosome data set from [Wong et al, 2014](http://dx.doi.org/10.7554/eLife.03080) ( [EMD 2660](https://www.ebi.ac.uk/emdb/EMD-2660) , [EMPIAR-10028](https://www.ebi.ac.uk/empiar/EMPIAR-10028/); courtesy of the [Relion Wiki](https://www3.mrc-lmb.cam.ac.uk/relion/index.php?title=Benchmarks_%26_computer_hardware).
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+To allow for shorter runtimes during 2D classification benchmarks, input STAR files were truncated by removal of partical entries.
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