Linux Benchmarking

• Benchmark Summaries
• Benchmarking Systems
• Benchmarking Datasets

Benchmark Summaries

Relion 2D classification

System	Runtime (s)	Notes
Workstation 1	712
Workstation 2	398	2x GPU
GPU Node 1	281	4x GPU

Benchmarking Systems

Workstation 1

• 8x Xeon E5-1630 v4
• 128G RAM
• 1x GeForce RTX 2080
• 1 Gb/s network

Workstation 2

• 48x Xeon E5-268W v4
• 128G RAM
• 2x GeForce GTX 1080 Ti
• 10 Gb/s network

GPU Node 1

• 64x AMD EPYC 7502
• 256G RAM
• 4x RTX A5000
• 10 Gb/s network

Notes

Core counts determined via "nproc" output, and include hyperthreading where enabled.

Benchmarking Datasets

Dataset 1

Plasmodium ribosome data set from Wong et al, 2014 ( EMD 2660 , EMPIAR-10028; courtesy of the Relion Wiki.

To allow for shorter runtimes during 2D classification benchmarks, input STAR files were truncated by removal of partical entries.