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Volume_Seg_Tool

  • Description

    a tool that utilizes deep learning to perform volumetric electron microscopy image segmentations, both semantic and instance segmentation.

  • Usage

    To list all executables provided by Volume_Seg_Tool, run: $ sbgrid-list vst Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install vst Copy to clipboard Available operating systems: Linux 64

  • Primary Citation*

    Y. Huang, N. Jadav, G. Rutter, L. Szymanski, and M. B. &. D. P. Harland. 2025. A generalist deep-learning volume segmentation tool for volume electron microscopy of biological samples. Journal of Structural Biology. Science Direct. 217(3).


    • *Full citation information available through

  • Keywords

    Electron Microscopy

  • Default Versions

    Linux 64:  0.10.2 (8.0 GB)

  • Other Versions

      Linux 64:

      0.10.0 (7.9 GB) , 0.10.1 (8.7 GB) , 0.9.1 (6.4 GB) , 20250128 (13.6 GB)

  • Developers

    Lech Szymanski, Mihnea Bostina, Daniel Huang

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