Description

a feature-rich half-synthetic cryoEM micrograph generator that uses buffer cryoEM micrographs with junk and carbon masked out as real background.

Usage

Usage Notes

The ice_images directory for VirtualIce is not included.

Users can download the EMPIAR dir themselves and then specify location of that image dir and the required file list like this:

Approx 36GB

wget -r -np -nH --cut-dirs=3 ftp://ftp.ebi.ac.uk/empiar/world_availability/12287/data/ice_images/

ICE_IMAGES=/my/path/to/ice_images ICE_LIST=${ICE_IMAGES}/good_images_with_defocus.txt

virtualice.py -s 1TIM -d ${ICE_IMAGES} -i ${ICE_LIST} --imod_circle_color red

Installation