Search
Webinars Science Tales
Button for mobile navigation
Join us

Supported Applications

TomoNet

  • Description

    a software package with a modern graphical user interface to carry out the entire pipeline of cryoET and subtomogram averaging to achieve high resolution.

  • Usage

    To list all executables provided by TomoNet, run: $ sbgrid-list tomonet Copy to clipboard

  • Usage Notes

    TomoNet provides the following callable programs:

    tomoNet.py

    extraction_ts.py

    sta_expand.py

    predict_tomo_picking_ts.py

    sta_peet.py

    train_picking_ts.py

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install tomonet Copy to clipboard Available operating systems: Linux 64

  • Primary Citation*

    H. Wang, S. Liao, X. Yu, J. Zhang, and &. Z. H. Zhou. 2024. TomoNet: A streamlined cryoET software pipeline with automatic particle picking on flexible lattices. BioRXiv.


    • *Full citation information available through

  • Webinars

    TomoNet - Automatic Particle Picking of Flexible Lattice-Like Structures for CryoET.

    SBGrid webinars are hosted with partial support from the NIH R25 Continuing Education for Structural Biology Mentors #GM151273, in collaboration with Co-PI Jamaine Davis of Belmont University.

    Topic:
    TomoNet - Automatic Particle Picking of Flexible Lattice-Like Structures for CryoET.

    Hui Wang, Ph.D.
    Postdoc, Zhou Lab, University of California, Los Angeles

    Host: Alice Eruera
    Recorded on November 18, 2025

    For more information on TomoNet:
    https://sbgrid.org/software/titles/tomonet

  • Keywords

    Electron Microscopy, Tomography

  • Default Versions

    Linux 64:  1.04 (6.0 GB)

  • Other Versions

      Linux 64:

      beta_03 (8.6 GB)

  • Developers

    Hui Wang, Z. Hong Zhou, Xinye Yu, Jiayan Zhang, Shiqing Lao

Scroll