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Supported Applications

Slabify

  • Description

    is a command-line tool designed for the automatic segmentation of lamella slabs in cryo-electron tomography (cryo-ET) volumes. It utilizes local variance analysis to identify significant density regions and offers multiple operational modes, including robust plane fitting and manual boundary definition. This tool is particularly useful for enhancing particle picking and optimizing template matching in cryo-ET data processing.

  • Usage

    To list all executables provided by Slabify, run: $ sbgrid-list slabify Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install slabify Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Keywords

    Electron Microscopy

  • Default Versions

    Linux 64:  0.3.0 (536.1 MB)
    OS X INTEL:  0.3.0 (375.1 MB)

  • Developers

    Ricardo Righetto

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